Variant report

Variant	rs7762957
Chromosome Location	chr6:45174641-45174642
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45172898..45174663-chr6:45183138..45184691,2	K562	blood:
2	chr6:45170143..45173003-chr6:45173758..45175670,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10080909	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10498759	0.85[CEU][hapmap]
rs16873056	0.82[CEU][hapmap]
rs16873073	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs16873103	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs16873150	1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs16873215	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs16873351	0.85[CEU][hapmap];0.96[YRI][hapmap]
rs17209608	0.82[CEU][hapmap]
rs2396374	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs28463085	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28877051	0.82[EUR][1000 genomes]
rs34927422	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4582383	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs58398217	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs59379038	0.82[EUR][1000 genomes]
rs6901579	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6912047	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6925770	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs73441120	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73441122	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73441130	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73441184	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73444966	0.86[EUR][1000 genomes]
rs73444983	0.96[EUR][1000 genomes]
rs73447073	0.95[EUR][1000 genomes]
rs73451303	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7742332	1.00[CEU][hapmap];0.90[YRI][hapmap];0.97[EUR][1000 genomes]
rs7744673	0.85[CEU][hapmap];0.83[YRI][hapmap]
rs7764969	0.85[CEU][hapmap]
rs9296451	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs9463058	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9463066	1.00[CEU][hapmap]
rs9463071	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9463079	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9463080	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9463082	0.82[EUR][1000 genomes]
rs9472421	1.00[CEU][hapmap]
rs9472427	1.00[CEU][hapmap]
rs9472433	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9472434	1.00[CEU][hapmap];0.92[YRI][hapmap];0.90[EUR][1000 genomes]
rs9472435	0.97[EUR][1000 genomes]
rs9472436	0.97[EUR][1000 genomes]
rs9472438	1.00[CEU][hapmap]
rs9472454	0.85[CEU][hapmap];0.81[YRI][hapmap];0.84[EUR][1000 genomes]
rs9472455	0.82[EUR][1000 genomes]
rs9472457	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9472458	0.85[CEU][hapmap];0.96[YRI][hapmap];0.81[EUR][1000 genomes]
rs9472462	0.85[CEU][hapmap]
rs9472465	0.85[CEU][hapmap];0.82[YRI][hapmap]
rs9472468	0.85[CEU][hapmap]
rs9472470	0.85[CEU][hapmap]
rs9472472	0.85[CEU][hapmap]
rs9472477	0.82[CEU][hapmap]
rs9472482	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45173200-45175600	Enhancers	Dnd41	blood
2	chr6:45174400-45175800	Enhancers	HepG2	liver

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