Variant report

Variant	rs9472455
Chromosome Location	chr6:45259269-45259270
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10080909	0.86[EUR][1000 genomes]
rs10498759	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs16873150	0.86[EUR][1000 genomes]
rs16873215	0.83[EUR][1000 genomes]
rs16873351	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28463085	0.89[EUR][1000 genomes]
rs28877051	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34927422	0.99[EUR][1000 genomes]
rs4582383	0.99[EUR][1000 genomes]
rs58398217	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58892785	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs58902999	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs59379038	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6901579	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6912047	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6925770	0.85[EUR][1000 genomes]
rs73441120	0.83[EUR][1000 genomes]
rs73441122	0.83[EUR][1000 genomes]
rs73441130	0.83[EUR][1000 genomes]
rs73441184	0.99[EUR][1000 genomes]
rs73444672	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73444674	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73444688	0.88[EUR][1000 genomes]
rs73447073	0.85[EUR][1000 genomes]
rs73451303	0.85[EUR][1000 genomes]
rs7742332	0.85[EUR][1000 genomes]
rs7744673	0.89[EUR][1000 genomes]
rs7762957	0.82[EUR][1000 genomes]
rs7764969	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9296451	0.85[EUR][1000 genomes]
rs9463071	0.85[EUR][1000 genomes]
rs9463079	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9463080	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463082	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472454	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472457	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472458	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472462	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472464	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472465	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9472466	0.94[EUR][1000 genomes]
rs9472468	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472470	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472472	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45249800-45278200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr6:45257400-45259400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:45257600-45259400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:45257800-45262200	Weak transcription	Aorta	Aorta
5	chr6:45258800-45259600	Enhancers	Dnd41	blood
6	chr6:45258800-45259800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:45258800-45262400	Enhancers	Primary T helper cells PMA-I stimulated	--

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