Variant report

Variant	rs58902999
Chromosome Location	chr6:45284092-45284093
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10498759	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16873351	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs28463085	0.84[EUR][1000 genomes]
rs28877051	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34927422	0.93[EUR][1000 genomes]
rs4582383	0.93[EUR][1000 genomes]
rs58398217	0.93[EUR][1000 genomes]
rs58892785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59379038	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6901579	0.86[EUR][1000 genomes]
rs6912047	0.84[EUR][1000 genomes]
rs73441184	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs73444672	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73444674	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73444688	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7744673	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7764969	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9463079	0.84[EUR][1000 genomes]
rs9463080	0.92[EUR][1000 genomes]
rs9463082	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9472454	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472455	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9472457	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9472458	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472462	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472464	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472465	0.98[AFR][1000 genomes];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9472466	0.94[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9472468	0.96[EUR][1000 genomes]
rs9472470	0.96[EUR][1000 genomes]
rs9472472	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:45276800-45290400	Weak transcription	Fetal Heart	heart
3	chr6:45278600-45288000	Weak transcription	Left Ventricle	heart
4	chr6:45278800-45285000	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:45279000-45288400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:45280000-45290600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
7	chr6:45280600-45289200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45280600-45290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:45281000-45288200	Weak transcription	Dnd41	blood
10	chr6:45281200-45288200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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