Variant report

Variant	rs34927422
Chromosome Location	chr6:45248432-45248433
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10080909	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10498759	0.94[EUR][1000 genomes]
rs16873150	0.85[EUR][1000 genomes]
rs16873215	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16873351	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs28463085	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28877051	0.99[EUR][1000 genomes]
rs4582383	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58398217	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58892785	0.93[EUR][1000 genomes]
rs58902999	0.93[EUR][1000 genomes]
rs59379038	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6901579	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6912047	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6925770	0.86[EUR][1000 genomes]
rs73441120	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73441122	0.82[EUR][1000 genomes]
rs73441130	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73441184	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73444672	0.92[EUR][1000 genomes]
rs73444674	0.95[EUR][1000 genomes]
rs73444688	0.90[EUR][1000 genomes]
rs73444983	0.85[EUR][1000 genomes]
rs73447073	0.86[EUR][1000 genomes]
rs73451303	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7742332	0.86[EUR][1000 genomes]
rs7744673	0.91[EUR][1000 genomes]
rs7762957	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7764969	0.94[EUR][1000 genomes]
rs9296451	0.86[EUR][1000 genomes]
rs9463071	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9463079	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9463080	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9463082	0.99[EUR][1000 genomes]
rs9472435	0.86[EUR][1000 genomes]
rs9472436	0.86[EUR][1000 genomes]
rs9472454	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472455	0.99[EUR][1000 genomes]
rs9472457	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472458	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9472462	0.94[EUR][1000 genomes]
rs9472464	0.94[EUR][1000 genomes]
rs9472465	0.95[EUR][1000 genomes]
rs9472466	0.95[EUR][1000 genomes]
rs9472468	0.94[EUR][1000 genomes]
rs9472470	0.94[EUR][1000 genomes]
rs9472472	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv2763550	chr6:45186825-45275593	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45225600-45248800	Weak transcription	Ovary	ovary
2	chr6:45239200-45248800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:45239200-45248800	Weak transcription	Aorta	Aorta
4	chr6:45239400-45248800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:45239800-45248800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:45247600-45248800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr6:45247600-45248800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:45248200-45249400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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