Variant report

Variant	rs73441122
Chromosome Location	chr6:45177762-45177763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10080909	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16873056	0.83[AFR][1000 genomes]
rs16873073	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs16873103	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16873150	0.88[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs16873215	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2396374	0.88[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs28463085	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28877051	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs34927422	0.82[EUR][1000 genomes]
rs4582383	0.82[EUR][1000 genomes]
rs58398217	0.82[EUR][1000 genomes]
rs59379038	0.81[EUR][1000 genomes]
rs6901579	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6912047	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6925770	0.96[EUR][1000 genomes]
rs73441120	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73441130	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73441184	0.82[EUR][1000 genomes]
rs73444966	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs73444983	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs73447073	0.94[EUR][1000 genomes]
rs73451303	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7742332	0.96[EUR][1000 genomes]
rs7762957	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7764969	0.83[AFR][1000 genomes]
rs9296451	0.96[EUR][1000 genomes]
rs9463058	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9463071	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9463079	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9463080	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9463082	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9472421	0.83[AFR][1000 genomes]
rs9472433	0.86[EUR][1000 genomes]
rs9472434	0.89[EUR][1000 genomes]
rs9472435	0.96[EUR][1000 genomes]
rs9472436	0.96[EUR][1000 genomes]
rs9472454	0.82[EUR][1000 genomes]
rs9472455	0.83[EUR][1000 genomes]
rs9472457	0.82[EUR][1000 genomes]
rs9472458	0.80[EUR][1000 genomes]
rs9472462	0.83[AFR][1000 genomes]
rs9472468	0.85[AFR][1000 genomes]
rs9472472	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1024370	chr6:44878053-45251451	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv885864	chr6:44890760-45198796	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
5	nsv492309	chr6:45020402-45233484	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1032906	chr6:45069368-45212863	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1028068	chr6:45169010-45246577	Enhancers ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45175400-45178000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr6:45175600-45178800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:45176400-45177800	ZNF genes & repeats	Dnd41	blood
4	chr6:45176400-45178200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr6:45176800-45177800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr6:45177600-45178000	Enhancers	Fetal Thymus	thymus

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