Variant report

Variant	rs9472462
Chromosome Location	chr6:45290163-45290164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45290102..45292496-chr6:45343857..45345735,2	K562	blood:

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10080909	0.81[EUR][1000 genomes]
rs10498759	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873215	0.85[CEU][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16873351	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28463085	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs28877051	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34927422	0.94[EUR][1000 genomes]
rs4582383	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs58398217	0.94[EUR][1000 genomes]
rs58892785	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58902999	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59379038	0.93[EUR][1000 genomes]
rs6901579	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes]
rs6912047	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73441120	0.83[AFR][1000 genomes]
rs73441122	0.83[AFR][1000 genomes]
rs73441130	0.81[AFR][1000 genomes]
rs73441184	0.94[EUR][1000 genomes]
rs73444672	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73444674	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73444688	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73451303	0.80[EUR][1000 genomes]
rs7742332	0.80[EUR][1000 genomes]
rs7744673	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7762957	0.85[CEU][hapmap]
rs7764969	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9296451	0.80[EUR][1000 genomes]
rs9463071	0.80[EUR][1000 genomes]
rs9463079	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs9463080	1.00[CEU][hapmap];0.88[YRI][hapmap];0.84[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9463082	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472454	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9472455	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472457	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9472458	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9472464	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472465	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472466	0.99[EUR][1000 genomes]
rs9472468	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472470	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472472	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45275200-45290200	Weak transcription	Fetal Intestine Large	intestine
2	chr6:45276800-45290400	Weak transcription	Fetal Heart	heart
3	chr6:45280000-45290600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr6:45280600-45290400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr6:45285600-45290200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:45285600-45295800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:45288400-45290400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr6:45288400-45290400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr6:45288600-45290400	Weak transcription	Dnd41	blood
10	chr6:45288600-45291000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:45289000-45290800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:45289400-45290400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:45289800-45290200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:45289800-45294600	Weak transcription	Brain Anterior Caudate	brain
15	chr6:45290000-45290200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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