Variant report

Variant	rs16873351
Chromosome Location	chr6:45315350-45315351
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:45312353..45317699-chr6:45329934..45333110,5	K562	blood:

Variant related genes	Relation type
ENSG00000196284	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10080909	0.80[EUR][1000 genomes]
rs10498759	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16873215	0.85[CEU][hapmap]
rs28463085	0.86[EUR][1000 genomes]
rs28877051	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34927422	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4582383	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs58398217	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs58892785	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs58902999	0.81[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs59379038	0.94[EUR][1000 genomes]
rs6901579	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs6912047	0.86[EUR][1000 genomes]
rs73441184	0.95[EUR][1000 genomes]
rs73444672	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73444674	0.97[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73444688	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73451303	0.81[EUR][1000 genomes]
rs7744673	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7762957	0.85[CEU][hapmap];0.96[YRI][hapmap]
rs7764969	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9463071	0.81[EUR][1000 genomes]
rs9463079	0.86[EUR][1000 genomes]
rs9463080	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9463082	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9472454	1.00[CEU][hapmap];0.85[YRI][hapmap];0.95[EUR][1000 genomes]
rs9472455	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9472457	1.00[CEU][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs9472458	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs9472462	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472464	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472465	1.00[CEU][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472466	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472468	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472470	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472472	1.00[CEU][hapmap];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45296200-45322800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:45298400-45320800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:45299200-45333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:45299400-45343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr6:45301600-45329600	Weak transcription	Dnd41	blood
6	chr6:45304000-45324400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:45304200-45317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:45305000-45334000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:45305400-45339800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:45310800-45344800	Weak transcription	Ovary	ovary
11	chr6:45311600-45317600	Weak transcription	Osteobl	bone
12	chr6:45313200-45339000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:45313800-45317000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:45313800-45329600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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