Variant report

Variant	rs9472470
Chromosome Location	chr6:45328947-45328948
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10498759	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16873215	0.85[CEU][hapmap]
rs16873351	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28463085	0.85[EUR][1000 genomes]
rs28877051	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34927422	0.94[EUR][1000 genomes]
rs4582383	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs58398217	0.94[EUR][1000 genomes]
rs58892785	0.96[EUR][1000 genomes]
rs58902999	0.96[EUR][1000 genomes]
rs59379038	0.93[EUR][1000 genomes]
rs6901579	0.85[CEU][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes]
rs6912047	0.85[EUR][1000 genomes]
rs73441184	0.94[EUR][1000 genomes]
rs73444672	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73444674	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73444688	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73451303	0.80[EUR][1000 genomes]
rs7744673	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7762957	0.85[CEU][hapmap]
rs7764969	1.00[CEU][hapmap];0.92[MEX][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9463071	0.80[EUR][1000 genomes]
rs9463079	0.85[EUR][1000 genomes]
rs9463080	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs9463082	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472454	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9472455	0.98[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9472457	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs9472458	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs9472462	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472464	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472465	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472466	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9472468	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9472472	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028393	chr6:44875558-45822335	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv538211	chr6:44875558-45822335	ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv830652	chr6:45187467-45328983	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45299200-45333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:45299400-45343800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:45301600-45329600	Weak transcription	Dnd41	blood
4	chr6:45305000-45334000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:45305400-45339800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:45310800-45344800	Weak transcription	Ovary	ovary
7	chr6:45313200-45339000	Weak transcription	Fetal Intestine Small	intestine
8	chr6:45313800-45329600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr6:45316400-45344000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:45318200-45338800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr6:45319800-45332200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:45319800-45343800	Weak transcription	Osteobl	bone
13	chr6:45320200-45343800	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:45320800-45338800	Weak transcription	HepG2	liver
15	chr6:45320800-45344200	Weak transcription	NH-A	brain
16	chr6:45321400-45337400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:45323400-45344000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr6:45324200-45335400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:45326600-45344000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:45327800-45343400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:45328400-45332000	Weak transcription	H9 Cell Line	embryonic stem cell
22	chr6:45328600-45338800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:45328600-45343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:45328800-45329800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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