Variant report

Variant	rs9472605
Chromosome Location	chr6:45862562-45862563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10456556	1.00[YRI][hapmap]
rs10456557	1.00[YRI][hapmap]
rs2039716	1.00[YRI][hapmap]
rs7748705	1.00[AFR][1000 genomes]
rs9472608	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs9472609	0.96[AFR][1000 genomes]
rs9472611	0.96[AFR][1000 genomes]
rs9472612	0.96[AFR][1000 genomes]
rs9472613	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv885866	chr6:45825244-45863826	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45860400-45864400	Weak transcription	Left Ventricle	heart
2	chr6:45860400-45864400	Weak transcription	Right Atrium	heart
3	chr6:45860800-45863000	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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