Variant report

Variant	rs9472608
Chromosome Location	chr6:45866424-45866425
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ENPP5-2	chr6:45866380-45866814	NONHSAT112996

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs7748705	1.00[AFR][1000 genomes]
rs9472605	1.00[AFR][1000 genomes]
rs9472609	0.96[AFR][1000 genomes]
rs9472611	0.96[AFR][1000 genomes]
rs9472612	0.96[AFR][1000 genomes]
rs9472613	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45866800	Weak transcription	Fetal Heart	heart
2	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:45864800-45867400	Weak transcription	Psoas Muscle	Psoas
4	chr6:45865000-45868400	Weak transcription	Osteobl	bone
5	chr6:45865000-45870000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:45865200-45867000	Weak transcription	Fetal Intestine Small	intestine
7	chr6:45865200-45870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:45865200-45870000	Weak transcription	HSMMtube	muscle
9	chr6:45865400-45867000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:45865400-45867000	Weak transcription	Right Atrium	heart
11	chr6:45865400-45867400	Weak transcription	Left Ventricle	heart
12	chr6:45865400-45867400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:45865400-45868400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:45865400-45870000	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr6:45865600-45867000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:45865600-45867800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr6:45865600-45868400	Weak transcription	NHDF-Ad	bronchial
18	chr6:45865600-45868800	Weak transcription	Right Ventricle	heart
19	chr6:45866000-45867200	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr6:45866000-45867800	Weak transcription	Fetal Intestine Large	intestine
21	chr6:45866200-45867200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr6:45866200-45867800	Enhancers	Brain Germinal Matrix	brain
23	chr6:45866200-45868000	Enhancers	iPS-15b Cell Line	embryonic stem cell
24	chr6:45866200-45871000	Enhancers	HUES6 Cell Line	embryonic stem cell
25	chr6:45866400-45867600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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