Variant report

Variant	rs9475050
Chromosome Location	chr6:54738331-54738332
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs7745529	0.81[YRI][hapmap]
rs9464152	0.81[YRI][hapmap]
rs9464154	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464157	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9464163	1.00[AMR][1000 genomes]
rs9475025	0.80[YRI][hapmap]
rs9475028	0.80[YRI][hapmap]
rs9475048	0.82[YRI][hapmap]
rs9475051	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475053	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9475067	1.00[AMR][1000 genomes]
rs9475072	1.00[AMR][1000 genomes]
rs9475073	1.00[AMR][1000 genomes]
rs9475126	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54726600-54739600	Weak transcription	Small Intestine	intestine
2	chr6:54727200-54748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:54727400-54740400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr6:54727400-54743800	Weak transcription	Pancreas	Pancrea
5	chr6:54730400-54743800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:54731600-54739400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr6:54731800-54738800	Weak transcription	Fetal Intestine Large	intestine
8	chr6:54731800-54738800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:54732200-54739200	Weak transcription	Fetal Intestine Small	intestine
10	chr6:54734600-54741800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:54736800-54741800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr6:54737200-54742200	Enhancers	HMEC	breast
13	chr6:54737200-54746400	Enhancers	Hela-S3	cervix
14	chr6:54737600-54739000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:54737600-54739200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:54737600-54755800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr6:54737800-54740800	Enhancers	NHEK	skin
18	chr6:54738000-54739800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr6:54738200-54739400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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