Variant report

Variant	rs9475126
Chromosome Location	chr6:54909730-54909731
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs9464154	1.00[AMR][1000 genomes]
rs9464157	1.00[AMR][1000 genomes]
rs9464163	1.00[AMR][1000 genomes]
rs9475050	1.00[AMR][1000 genomes]
rs9475051	1.00[AMR][1000 genomes]
rs9475052	1.00[AMR][1000 genomes]
rs9475053	1.00[AMR][1000 genomes]
rs9475054	1.00[AMR][1000 genomes]
rs9475067	1.00[AMR][1000 genomes]
rs9475072	1.00[AMR][1000 genomes]
rs9475073	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54905400-54910000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:54905600-54910600	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr6:54906200-54910800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:54908800-54910000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:54909200-54910200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:54909400-54910000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr6:54909400-54911400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links