Variant report

Variant	rs9475188
Chromosome Location	chr6:55039786-55039787
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11751491	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3122155	0.86[EUR][1000 genomes]
rs3122163	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3122170	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134698	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134707	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs66476116	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9464203	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55038800-55039800	Active TSS	Fetal Brain Female	brain
2	chr6:55039000-55039800	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:55039000-55039800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
4	chr6:55039000-55039800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:55039000-55040000	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:55039000-55040000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
7	chr6:55039000-55040200	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
8	chr6:55039000-55040200	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:55039000-55040200	Enhancers	Pancreas	Pancrea
10	chr6:55039000-55040200	Active TSS	Right Atrium	heart
11	chr6:55039000-55040200	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
12	chr6:55039000-55040400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr6:55039000-55040400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
14	chr6:55039000-55040600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:55039000-55040600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
16	chr6:55039000-55040600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
17	chr6:55039000-55040600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr6:55039000-55040800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
19	chr6:55039000-55040800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
20	chr6:55039200-55039800	Bivalent/Poised TSS	Primary T cells from cord blood	blood
21	chr6:55039200-55039800	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:55039200-55039800	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
23	chr6:55039200-55039800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
24	chr6:55039200-55039800	Bivalent/Poised TSS	Brain Substantia Nigra	brain
25	chr6:55039200-55040000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr6:55039200-55040000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:55039200-55040000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr6:55039200-55040000	Bivalent/Poised TSS	Brain Angular Gyrus	brain
29	chr6:55039200-55040000	Active TSS	Brain Anterior Caudate	brain
30	chr6:55039200-55040000	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr6:55039200-55040000	Enhancers	Gastric	stomach
32	chr6:55039200-55040000	Bivalent/Poised TSS	Psoas Muscle	Psoas
33	chr6:55039200-55040000	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
34	chr6:55039200-55040400	Active TSS	Right Ventricle	heart
35	chr6:55039200-55040800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
36	chr6:55039400-55039800	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:55039400-55039800	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr6:55039400-55039800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
39	chr6:55039400-55040000	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr6:55039400-55040000	Flanking Bivalent TSS/Enh	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:55039400-55040000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
42	chr6:55039400-55040200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:55039400-55040200	Bivalent Enhancer	Stomach Mucosa	stomach
44	chr6:55039400-55040400	Bivalent Enhancer	Fetal Heart	heart
45	chr6:55039400-55040600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
46	chr6:55039600-55039800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr6:55039600-55039800	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast
48	chr6:55039600-55039800	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:55039600-55039800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:55039600-55039800	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum

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