Variant report
| Variant | rs9475219 |
|---|---|
| Chromosome Location | chr6:55119930-55119931 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:10)
| rs_ID | r2[population] |
|---|---|
| rs10214729 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9464217 | 1.00[EUR][1000 genomes] |
| rs9464218 | 1.00[EUR][1000 genomes] |
| rs9464242 | 1.00[EUR][1000 genomes] |
| rs9475209 | 0.89[YRI][hapmap] |
| rs9475215 | 1.00[EUR][1000 genomes] |
| rs9475216 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs9475223 | 1.00[ASW][hapmap];0.92[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap] |
| rs9475225 | 1.00[EUR][1000 genomes] |
| rs9475285 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1016461 | chr6:55038131-55129663 | Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
