Variant report

Variant	rs9476659
Chromosome Location	chr6:14797895-14797896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14777024..14778711-chr6:14797868..14799814,2	K562	blood:
2	chr6:14797001..14802228-chr6:14803331..14807791,8	K562	blood:
3	chr6:14788518..14794395-chr6:14794732..14800573,9	K562	blood:
4	chr6:14788518..14793706-chr6:14794732..14798301,6	K562	blood:
5	chr6:14790824..14794391-chr6:14796656..14800219,3	MCF-7	breast:
6	chr6:14732898..14735132-chr6:14797546..14800169,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9464721	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023685	chr6:14514647-14838390	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1031668	chr6:14774036-15044308	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv538138	chr6:14774036-15044308	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14787800-14802600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr6:14789000-14798600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:14790800-14802400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:14791000-14798400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:14791400-14802600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:14793400-14798600	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:14793600-14803800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr6:14796200-14798000	Enhancers	Fetal Heart	heart
9	chr6:14796600-14799000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:14797200-14798000	Enhancers	Adipose Nuclei	Adipose
11	chr6:14797200-14798800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:14797600-14798000	Enhancers	HMEC	breast
13	chr6:14797600-14798200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:14797600-14798600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:14797600-14798600	Enhancers	NHEK	skin
16	chr6:14797600-14799400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr6:14797600-14799600	Enhancers	Dnd41	blood
18	chr6:14797600-14799600	Enhancers	K562	blood
19	chr6:14797800-14798000	Enhancers	Fetal Thymus	thymus
20	chr6:14797800-14798200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr6:14797800-14798200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr6:14797800-14799000	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr6:14797800-14799200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr6:14797800-14799200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:14797800-14799200	Enhancers	Ovary	ovary

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