Variant report

Variant	rs9476847
Chromosome Location	chr6:15557507-15557508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15555829..15558724-chr6:15620629..15623055,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6906100	0.81[EUR][1000 genomes]
rs6918834	0.83[EUR][1000 genomes]
rs7758659	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9296983	0.83[AMR][1000 genomes]
rs9396593	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9464796	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:15552200-15569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr6:15552400-15563000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
7	chr6:15552400-15577400	Weak transcription	Lung	lung
8	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr6:15552600-15568800	Weak transcription	Fetal Kidney	kidney
10	chr6:15552600-15569800	Weak transcription	Primary B cells from cord blood	blood
11	chr6:15553600-15569600	Weak transcription	Left Ventricle	heart
12	chr6:15553800-15563800	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
14	chr6:15555000-15573200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr6:15555800-15562000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15556400-15571800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr6:15556600-15570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:15556800-15571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr6:15557200-15558000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr6:15557200-15563600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
22	chr6:15557400-15557800	Active TSS	K562	blood
23	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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