Variant report

Variant	rs9464796
Chromosome Location	chr6:15549764-15549765
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr6:15549650-15549910	GM12878	blood:	n/a	chr6:15549752-15549759 chr6:15549819-15549829
2	TCF12	chr6:15549679-15549921	GM12878	blood:	n/a	chr6:15549752-15549759 chr6:15549819-15549829
3	EBF1	chr6:15549706-15549930	GM12878	blood:	n/a	n/a
4	ZNF384	chr6:15549733-15549884	K562	blood:	n/a	n/a
5	SPI1	chr6:15549665-15549897	GM12878	blood:	n/a	n/a
6	SPI1	chr6:15549413-15549968	GM12878	blood:	n/a	n/a
7	SPI1	chr6:15549569-15549971	GM12891	blood:	n/a	n/a
8	ZNF384	chr6:15549630-15549886	GM12878	blood:	n/a	n/a
9	SPI1	chr6:15549604-15549949	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:15545587..15549018-chr6:15549225..15553433,4	K562	blood:
2	chr6:15540041..15541969-chr6:15549123..15551420,2	K562	blood:
3	chr6:15548804..15551756-chr6:15553738..15555396,2	K562	blood:

Variant related genes	Relation type
DTNBP1	TF binding region
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11756738	0.94[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13192791	0.88[EUR][1000 genomes]
rs13198195	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13198335	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13212086	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13217513	0.88[EUR][1000 genomes]
rs1988856	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2056942	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2619531	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2619551	0.82[EUR][1000 genomes]
rs6903266	0.94[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906100	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918834	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6937379	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71533648	0.89[EUR][1000 genomes]
rs760665	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs760666	1.00[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7738263	0.89[EUR][1000 genomes]
rs7745876	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7745907	0.84[AMR][1000 genomes]
rs7758659	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7760564	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7765924	0.90[EUR][1000 genomes]
rs7768128	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs875462	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs9296983	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296986	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9383063	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9396593	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9476847	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15524800-15549800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr6:15525000-15553400	Weak transcription	Ovary	ovary
3	chr6:15529400-15549800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:15532600-15549800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:15533600-15551000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr6:15534000-15551600	Weak transcription	Aorta	Aorta
7	chr6:15534400-15551000	Weak transcription	K562	blood
8	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
9	chr6:15537000-15549800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:15537000-15550000	Weak transcription	Psoas Muscle	Psoas
11	chr6:15537000-15551000	Weak transcription	Left Ventricle	heart
12	chr6:15537000-15551600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr6:15537000-15551800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:15537000-15554400	Weak transcription	Fetal Intestine Large	intestine
15	chr6:15539800-15554000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:15540000-15550800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:15540000-15551800	Weak transcription	Gastric	stomach
18	chr6:15540200-15551000	Weak transcription	Pancreas	Pancrea
19	chr6:15544200-15551400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr6:15544800-15551600	Weak transcription	Primary T cells from cord blood	blood
21	chr6:15545000-15550800	Weak transcription	Primary B cells from cord blood	blood
22	chr6:15545000-15550800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr6:15545000-15554200	Weak transcription	Monocytes-CD14+_RO01746	blood
24	chr6:15545200-15550800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:15545400-15551400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:15546200-15549800	Weak transcription	Right Ventricle	heart
27	chr6:15546200-15551000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr6:15546400-15551000	Weak transcription	Right Atrium	heart
29	chr6:15546600-15551600	Weak transcription	Lung	lung
30	chr6:15547000-15549800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:15547000-15549800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr6:15547000-15551000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:15547400-15563200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr6:15547800-15549800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr6:15547800-15550000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:15547800-15551000	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr6:15547800-15551200	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr6:15547800-15551600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr6:15547800-15552000	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:15548000-15549800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr6:15548000-15550600	Weak transcription	Fetal Heart	heart
42	chr6:15548000-15550800	Weak transcription	Fetal Muscle Leg	muscle
43	chr6:15548000-15551000	Weak transcription	Brain Anterior Caudate	brain
44	chr6:15548000-15551000	Weak transcription	Spleen	Spleen
45	chr6:15548000-15551400	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:15548000-15551800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr6:15548000-15551800	Weak transcription	Sigmoid Colon	Sigmoid Colon
48	chr6:15548000-15553800	Weak transcription	NHLF	lung
49	chr6:15548200-15551200	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr6:15548200-15551400	Weak transcription	Fetal Kidney	kidney

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