Variant report

Variant	rs760665
Chromosome Location	chr6:15573350-15573351
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11756738	0.94[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13192791	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13198195	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13198335	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs13198533	0.83[YRI][hapmap]
rs13212086	0.87[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13217513	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1988856	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2056942	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2619531	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2619551	0.82[EUR][1000 genomes]
rs6903266	0.94[CEU][hapmap];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6906100	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6918834	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6937379	0.87[EUR][1000 genomes]
rs71533648	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs760666	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7738263	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7745876	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7745907	0.80[AMR][1000 genomes]
rs7758659	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7760564	0.92[EUR][1000 genomes]
rs7765924	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7768128	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs875462	1.00[CEU][hapmap];0.83[YRI][hapmap];0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9296983	1.00[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9296986	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9383063	0.85[EUR][1000 genomes]
rs9396593	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9464796	1.00[CEU][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
3	chr6:15552400-15577400	Weak transcription	Lung	lung
4	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
6	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
7	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:15561600-15578200	Weak transcription	Pancreas	Pancrea
9	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
10	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:15562400-15574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:15563400-15577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:15563400-15577800	Weak transcription	Brain Anterior Caudate	brain
14	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr6:15564000-15574400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:15565400-15593200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:15565800-15595800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:15567200-15593800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr6:15570000-15573400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr6:15570000-15574200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr6:15570000-15574400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr6:15570000-15578000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr6:15570000-15578200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr6:15570000-15581200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr6:15570200-15574400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr6:15570200-15575000	Weak transcription	Right Ventricle	heart
28	chr6:15570200-15581000	Weak transcription	Left Ventricle	heart
29	chr6:15570400-15574400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:15570400-15578200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:15570400-15578200	Weak transcription	Rectal Smooth Muscle	rectum
32	chr6:15570400-15583400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr6:15570800-15574400	Weak transcription	K562	blood
34	chr6:15571000-15574200	Weak transcription	Dnd41	blood
35	chr6:15571200-15593000	Weak transcription	Primary T helper cells fromperipheralblood	blood
36	chr6:15571800-15574800	Strong transcription	Primary B cells from cord blood	blood
37	chr6:15572000-15573800	Weak transcription	Fetal Intestine Small	intestine
38	chr6:15572200-15576000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr6:15572400-15575000	Enhancers	Placenta	Placenta
40	chr6:15572600-15574400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr6:15572800-15574800	Strong transcription	Primary B cells from peripheral blood	blood
42	chr6:15573000-15575000	Weak transcription	Rectal Mucosa Donor 29	rectum
43	chr6:15573000-15576400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr6:15573200-15574800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr6:15573200-15575000	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr6:15573200-15575200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
47	chr6:15573200-15577800	Weak transcription	Gastric	stomach

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