Variant report

Variant	rs71533648
Chromosome Location	chr6:15626181-15626182
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15625351..15627546-chr6:16128970..16130700,2	K562	blood:
2	chr6:15624573..15630362-chr6:15631588..15637195,8	K562	blood:
3	chr6:15516906..15518572-chr6:15624201..15626502,2	K562	blood:
4	chr6:15244609..15248031-chr6:15625118..15627694,4	K562	blood:

Variant related genes	Relation type
ENSG00000271888	Chromatin interaction
ENSG00000007944	Chromatin interaction
ENSG00000008083	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11756738	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13192791	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13198195	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13198335	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13212086	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13217513	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1988856	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2056942	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2619531	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2619551	0.80[EUR][1000 genomes]
rs6903266	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906100	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6918834	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6937379	0.81[EUR][1000 genomes]
rs760665	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs760666	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7738263	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7745876	0.89[EUR][1000 genomes]
rs7758659	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7760564	0.86[EUR][1000 genomes]
rs7765924	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7768128	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs875462	0.91[EUR][1000 genomes]
rs9296983	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9296986	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9383063	0.89[EUR][1000 genomes]
rs9396593	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9464796	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
3	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
4	chr6:15609000-15628200	Weak transcription	HSMM	muscle
5	chr6:15609600-15627400	Weak transcription	HUVEC	blood vessel
6	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
7	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr6:15614800-15641600	Weak transcription	Lung	lung
9	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
10	chr6:15615200-15641000	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr6:15615200-15642200	Weak transcription	Thymus	Thymus
12	chr6:15615200-15662200	Weak transcription	Gastric	stomach
13	chr6:15615400-15628800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr6:15615600-15626600	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr6:15615600-15639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr6:15616800-15630200	Weak transcription	HepG2	liver
18	chr6:15616800-15631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr6:15616800-15632000	Weak transcription	Esophagus	oesophagus
20	chr6:15616800-15638600	Weak transcription	Psoas Muscle	Psoas
21	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
22	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:15617000-15631400	Weak transcription	Fetal Intestine Large	intestine
24	chr6:15618800-15626200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr6:15621000-15627800	Weak transcription	Fetal Brain Female	brain
26	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
27	chr6:15622000-15628800	Weak transcription	Fetal Stomach	stomach
28	chr6:15622200-15626200	Weak transcription	Fetal Thymus	thymus
29	chr6:15622200-15627000	Weak transcription	Ovary	ovary
30	chr6:15622200-15627600	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:15622200-15628200	Weak transcription	NHLF	lung
32	chr6:15622200-15632000	Weak transcription	Fetal Intestine Small	intestine
33	chr6:15622200-15637800	Weak transcription	Small Intestine	intestine
34	chr6:15622200-15638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr6:15622200-15641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr6:15622200-15641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:15622200-15641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr6:15622200-15643600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr6:15622400-15627200	Weak transcription	Osteobl	bone
41	chr6:15622400-15627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr6:15622800-15627400	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr6:15623000-15627000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr6:15623000-15627000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
45	chr6:15623000-15627800	Weak transcription	Fetal Kidney	kidney
46	chr6:15623000-15628400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr6:15623000-15628800	Weak transcription	HMEC	breast
48	chr6:15623000-15628800	Weak transcription	NHEK	skin
49	chr6:15623000-15630200	Weak transcription	Liver	Liver
50	chr6:15623400-15626800	Weak transcription	GM12878-XiMat	blood

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