Variant report

Variant	rs2619531
Chromosome Location	chr6:15564883-15564884
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15563859..15565527-chr6:15570694..15572380,2	K562	blood:
2	chr6:15562390..15566134-chr6:15567987..15569843,3	K562	blood:
3	chr6:15559880..15562215-chr6:15563099..15565943,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11756738	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13192791	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13198195	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13198335	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13212086	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13217513	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1988856	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2056942	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2619551	0.83[EUR][1000 genomes]
rs6903266	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6906100	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6918834	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6937379	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs71533648	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs760665	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs760666	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7738263	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7745876	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7745907	0.84[AMR][1000 genomes]
rs7758659	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7760564	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7765924	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7768128	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs875462	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9296983	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9296986	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9383063	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9396593	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9464796	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15552200-15569200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr6:15552400-15571800	Weak transcription	Fetal Intestine Small	intestine
4	chr6:15552400-15574200	Weak transcription	Primary T cells from cord blood	blood
5	chr6:15552400-15577400	Weak transcription	Lung	lung
6	chr6:15552400-15578200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:15552600-15568800	Weak transcription	Fetal Kidney	kidney
8	chr6:15552600-15569800	Weak transcription	Primary B cells from cord blood	blood
9	chr6:15553600-15569600	Weak transcription	Left Ventricle	heart
10	chr6:15554400-15577600	Weak transcription	Aorta	Aorta
11	chr6:15555000-15573200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:15556400-15571800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr6:15556600-15570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:15556800-15571400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:15557200-15577600	Weak transcription	Spleen	Spleen
16	chr6:15557400-15574400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr6:15560800-15568200	Weak transcription	Dnd41	blood
18	chr6:15560800-15569800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr6:15561600-15578200	Weak transcription	Pancreas	Pancrea
20	chr6:15562000-15572800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr6:15562200-15580400	Weak transcription	Fetal Thymus	thymus
22	chr6:15562200-15588800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr6:15562400-15567000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr6:15562400-15574400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:15563400-15568200	Weak transcription	K562	blood
26	chr6:15563400-15577600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr6:15563400-15577800	Weak transcription	Brain Anterior Caudate	brain
28	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr6:15563800-15569000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr6:15563800-15569000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr6:15564000-15569000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr6:15564000-15569200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr6:15564000-15569800	Weak transcription	Fetal Muscle Leg	muscle
34	chr6:15564000-15574400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:15564000-15586800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:15564200-15565200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr6:15564200-15569200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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