Variant report

Variant	rs13198335
Chromosome Location	chr6:15628748-15628749
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15628093..15630897-chr6:16130516..16132083,2	K562	blood:
2	chr6:15628080..15630749-chr6:15690393..15693220,2	K562	blood:
3	chr6:15619999..15626180-chr6:15626228..15631294,14	K562	blood:
4	chr6:15624573..15630362-chr6:15631588..15637195,8	K562	blood:
5	chr6:15628579..15630551-chr6:15656798..15659188,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11756738	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13192791	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13198195	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13212086	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13217513	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1988856	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2056942	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2619531	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6903266	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6906100	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6918834	0.80[AMR][1000 genomes]
rs71533648	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs760665	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs760666	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7738263	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7745876	0.81[EUR][1000 genomes]
rs7745907	0.81[AMR][1000 genomes]
rs7758659	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7760564	0.80[AMR][1000 genomes]
rs7765924	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7768128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs875462	0.83[EUR][1000 genomes]
rs9296983	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9296986	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9383063	0.81[EUR][1000 genomes]
rs9396593	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9464796	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv2755670	chr6:15624762-15736008	Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
2	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
3	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
4	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr6:15614800-15641600	Weak transcription	Lung	lung
6	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
7	chr6:15615200-15641000	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:15615200-15642200	Weak transcription	Thymus	Thymus
9	chr6:15615200-15662200	Weak transcription	Gastric	stomach
10	chr6:15615400-15628800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr6:15615600-15639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr6:15616800-15630200	Weak transcription	HepG2	liver
14	chr6:15616800-15631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr6:15616800-15632000	Weak transcription	Esophagus	oesophagus
16	chr6:15616800-15638600	Weak transcription	Psoas Muscle	Psoas
17	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
18	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr6:15617000-15631400	Weak transcription	Fetal Intestine Large	intestine
20	chr6:15621800-15662200	Weak transcription	Pancreas	Pancrea
21	chr6:15622000-15628800	Weak transcription	Fetal Stomach	stomach
22	chr6:15622200-15632000	Weak transcription	Fetal Intestine Small	intestine
23	chr6:15622200-15637800	Weak transcription	Small Intestine	intestine
24	chr6:15622200-15638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr6:15622200-15641000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr6:15622200-15641600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr6:15622200-15641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:15622200-15643600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr6:15622200-15649200	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr6:15623000-15628800	Weak transcription	HMEC	breast
31	chr6:15623000-15628800	Weak transcription	NHEK	skin
32	chr6:15623000-15630200	Weak transcription	Liver	Liver
33	chr6:15623600-15641000	Weak transcription	Brain Hippocampus Middle	brain
34	chr6:15623600-15643200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr6:15623800-15631800	Weak transcription	Adipose Nuclei	Adipose
36	chr6:15623800-15638800	Weak transcription	Fetal Muscle Leg	muscle
37	chr6:15623800-15639000	Weak transcription	Left Ventricle	heart
38	chr6:15623800-15662000	Weak transcription	Stomach Smooth Muscle	stomach
39	chr6:15624200-15631600	Weak transcription	Colon Smooth Muscle	Colon
40	chr6:15624400-15628800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr6:15624400-15628800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr6:15624400-15641600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:15624400-15642000	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr6:15626000-15630400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:15626400-15639000	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:15626400-15641000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr6:15626600-15629400	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr6:15626600-15629600	Enhancers	Primary T cells from cord blood	blood
49	chr6:15626600-15637200	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr6:15626800-15629400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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