Variant report

Variant	rs13217513
Chromosome Location	chr6:15623407-15623408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:15210626..15213577-chr6:15621189..15623887,2	K562	blood:
2	chr6:15521023..15521951-chr6:15623256..15624063,2	MCF-7	breast:
3	chr6:15614240..15617962-chr6:15618192..15624237,8	K562	blood:
4	chr6:15516024..15516867-chr6:15623341..15624394,3	MCF-7	breast:
5	chr6:15508040..15509994-chr6:15621432..15624350,2	K562	blood:
6	chr6:15623198..15625470-chr6:15641249..15644196,2	K562	blood:
7	chr6:15619999..15626180-chr6:15626228..15631294,14	K562	blood:
8	chr6:15513560..15515780-chr6:15623182..15625546,2	K562	blood:
9	chr6:15510035..15513200-chr6:15622325..15624212,4	K562	blood:

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11756738	0.94[CEU][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13192791	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13198195	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13198335	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13212086	0.87[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1988856	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2056942	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2619531	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6903266	0.94[CEU][hapmap];0.84[YRI][hapmap];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6906100	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918834	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71533648	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs760665	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs760666	1.00[CEU][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7738263	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7745876	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7758659	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7760564	0.85[EUR][1000 genomes]
rs7765924	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7768128	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs875462	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9296983	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9296986	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9383063	0.88[EUR][1000 genomes]
rs9396593	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9464796	1.00[CEU][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr6:15597000-15641600	Weak transcription	Spleen	Spleen
3	chr6:15600000-15660400	Weak transcription	Hela-S3	cervix
4	chr6:15604800-15623600	Weak transcription	Right Ventricle	heart
5	chr6:15609000-15628200	Weak transcription	HSMM	muscle
6	chr6:15609600-15627400	Weak transcription	HUVEC	blood vessel
7	chr6:15610400-15626000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:15610600-15640200	Weak transcription	Aorta	Aorta
9	chr6:15611800-15641800	Weak transcription	Fetal Muscle Trunk	muscle
10	chr6:15614800-15641600	Weak transcription	Lung	lung
11	chr6:15615000-15652600	Weak transcription	Colonic Mucosa	Colon
12	chr6:15615200-15624000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr6:15615200-15626000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr6:15615200-15626000	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr6:15615200-15641000	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr6:15615200-15642200	Weak transcription	Thymus	Thymus
17	chr6:15615200-15662200	Weak transcription	Gastric	stomach
18	chr6:15615400-15623600	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr6:15615400-15624000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:15615400-15628800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr6:15615400-15643000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:15615600-15623600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:15615600-15624000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr6:15615600-15626600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:15615600-15639000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr6:15616800-15623600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:15616800-15630200	Weak transcription	HepG2	liver
28	chr6:15616800-15631800	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr6:15616800-15632000	Weak transcription	Esophagus	oesophagus
30	chr6:15616800-15638600	Weak transcription	Psoas Muscle	Psoas
31	chr6:15616800-15662000	Weak transcription	Placenta	Placenta
32	chr6:15616800-15662200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:15617000-15626000	Weak transcription	Duodenum Mucosa	Duodenum
34	chr6:15617000-15631400	Weak transcription	Fetal Intestine Large	intestine
35	chr6:15618800-15626200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:15620600-15623800	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr6:15620600-15623800	Enhancers	Fetal Muscle Leg	muscle
38	chr6:15620800-15623600	Enhancers	Fetal Heart	heart
39	chr6:15621000-15627800	Weak transcription	Fetal Brain Female	brain
40	chr6:15621400-15623600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:15621400-15623800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:15621400-15623800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr6:15621400-15623800	Enhancers	Primary monocytes fromperipheralblood	blood
44	chr6:15621400-15623800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr6:15621400-15623800	Enhancers	Adipose Nuclei	Adipose
46	chr6:15621400-15623800	Enhancers	Fetal Lung	lung
47	chr6:15621400-15624400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr6:15621600-15623600	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr6:15621600-15623800	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr6:15621600-15623800	Enhancers	Rectal Smooth Muscle	rectum

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