Variant report

Variant	rs9383063
Chromosome Location	chr6:15534573-15534574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15529195..15531595-chr6:15533933..15536941,3	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11756738	0.86[EUR][1000 genomes]
rs13192791	0.88[EUR][1000 genomes]
rs13198195	0.80[EUR][1000 genomes]
rs13198335	0.81[EUR][1000 genomes]
rs13212086	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13217513	0.88[EUR][1000 genomes]
rs1988856	0.91[EUR][1000 genomes]
rs2056942	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2619531	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2619551	0.80[EUR][1000 genomes]
rs6903266	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6906100	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6918834	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6937379	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71533648	0.89[EUR][1000 genomes]
rs760665	0.85[EUR][1000 genomes]
rs760666	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7738263	0.88[EUR][1000 genomes]
rs7745876	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7745907	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7758659	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7760564	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7765924	0.90[EUR][1000 genomes]
rs7768128	0.81[EUR][1000 genomes]
rs875462	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9296983	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296986	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9396593	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9464796	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv538140	chr6:15217899-15547127	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv522265	chr6:15494177-15546213	ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv428473	chr6:15522653-15595739	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15512600-15536400	Weak transcription	Psoas Muscle	Psoas
2	chr6:15523600-15535800	Weak transcription	Small Intestine	intestine
3	chr6:15523600-15540000	Weak transcription	NHEK	skin
4	chr6:15524200-15535800	Weak transcription	Stomach Mucosa	stomach
5	chr6:15524400-15535400	Weak transcription	A549	lung
6	chr6:15524400-15549400	Weak transcription	Hela-S3	cervix
7	chr6:15524600-15536600	Weak transcription	Right Ventricle	heart
8	chr6:15524800-15536600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:15524800-15549800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr6:15525000-15536000	Weak transcription	NHLF	lung
11	chr6:15525000-15536400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:15525000-15536600	Weak transcription	Colonic Mucosa	Colon
13	chr6:15525000-15539000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:15525000-15553400	Weak transcription	Ovary	ovary
15	chr6:15525200-15536400	Weak transcription	Adipose Nuclei	Adipose
16	chr6:15525400-15539000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr6:15527000-15535400	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr6:15527200-15541400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:15528400-15547400	Weak transcription	Fetal Kidney	kidney
20	chr6:15528600-15543600	Weak transcription	GM12878-XiMat	blood
21	chr6:15528600-15546800	Weak transcription	Fetal Lung	lung
22	chr6:15529000-15541200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr6:15529400-15535200	Weak transcription	Primary hematopoietic stem cells	blood
24	chr6:15529400-15536400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:15529400-15549800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr6:15530000-15538800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:15530200-15536000	Weak transcription	Fetal Heart	heart
28	chr6:15531000-15536400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr6:15531200-15536200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr6:15531600-15534600	Weak transcription	HSMMtube	muscle
31	chr6:15531800-15535400	Weak transcription	Liver	Liver
32	chr6:15531800-15536000	Weak transcription	Brain Hippocampus Middle	brain
33	chr6:15531800-15536000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr6:15531800-15536600	Weak transcription	Left Ventricle	heart
35	chr6:15531800-15545800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr6:15532000-15535600	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr6:15532000-15536000	Weak transcription	HepG2	liver
38	chr6:15532400-15536000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr6:15532400-15536400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr6:15532600-15535200	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr6:15532600-15535800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr6:15532600-15536400	Weak transcription	Brain Germinal Matrix	brain
43	chr6:15532600-15536600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr6:15532600-15536600	Weak transcription	Fetal Thymus	thymus
45	chr6:15532600-15536600	Weak transcription	Pancreas	Pancrea
46	chr6:15532600-15549800	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr6:15532800-15535000	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr6:15532800-15538200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:15532800-15539000	Weak transcription	Brain Anterior Caudate	brain
50	chr6:15532800-15542000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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