Variant report

Variant	rs6903266
Chromosome Location	chr6:15596992-15596993
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:15589180..15591388-chr6:15596744..15598530,2	MCF-7	breast:
2	chr6:15553573..15555100-chr6:15595699..15598673,2	K562	blood:
3	chr6:15596442..15599800-chr6:15601331..15603153,3	K562	blood:
4	chr6:15596050..15597851-chr6:15598381..15599957,2	MCF-7	breast:
5	chr6:15584555..15586348-chr6:15595820..15598567,2	K562	blood:

Variant related genes	Relation type
ENSG00000047579	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11756738	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13192791	0.87[EUR][1000 genomes]
rs13198195	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13198335	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13212086	0.86[CEU][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13217513	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1988856	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2056942	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2619531	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6906100	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6918834	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6937379	0.82[AMR][1000 genomes]
rs71533648	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs760665	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs760666	0.93[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7738263	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7745876	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7745907	0.86[AMR][1000 genomes]
rs7758659	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7760564	0.82[AMR][1000 genomes]
rs7765924	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7768128	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs875462	0.93[CEU][hapmap];0.84[YRI][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9296983	0.93[CEU][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9296986	0.94[CEU][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9383063	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9396593	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9464796	0.94[CEU][hapmap];0.86[YRI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428136	chr6:15595640-15781241	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15534400-15609800	Weak transcription	Thymus	Thymus
2	chr6:15563400-15604200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:15574800-15603600	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:15585400-15609800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr6:15586200-15604600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr6:15587000-15602600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr6:15587000-15616200	Weak transcription	Pancreas	Pancrea
8	chr6:15587400-15602400	Weak transcription	K562	blood
9	chr6:15587400-15605200	Weak transcription	NHDF-Ad	bronchial
10	chr6:15589800-15610000	Weak transcription	GM12878-XiMat	blood
11	chr6:15589800-15614400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr6:15590000-15608400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:15590400-15610000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr6:15591800-15602200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr6:15592200-15597200	Enhancers	Fetal Heart	heart
16	chr6:15593000-15611000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:15593000-15613800	Weak transcription	Gastric	stomach
18	chr6:15593200-15597600	Weak transcription	Dnd41	blood
19	chr6:15593200-15615800	Weak transcription	HepG2	liver
20	chr6:15593400-15600400	Weak transcription	Fetal Intestine Large	intestine
21	chr6:15593600-15597200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:15593600-15611000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr6:15593800-15597000	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr6:15593800-15597600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:15593800-15621800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr6:15594000-15608600	Weak transcription	Duodenum Mucosa	Duodenum
27	chr6:15594000-15612800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr6:15594000-15616200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:15594000-15621800	Weak transcription	Brain Hippocampus Middle	brain
30	chr6:15594000-15626600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr6:15594200-15608400	Weak transcription	HSMM	muscle
32	chr6:15594200-15610000	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr6:15594400-15610000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr6:15594600-15614600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:15595200-15597200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr6:15595200-15597200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr6:15595200-15597200	Enhancers	Fetal Muscle Leg	muscle
38	chr6:15595200-15597200	Enhancers	Right Atrium	heart
39	chr6:15595600-15597600	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr6:15595800-15597000	Strong transcription	Primary hematopoietic stem cells	blood
41	chr6:15595800-15597000	Enhancers	Aorta	Aorta
42	chr6:15595800-15597000	Enhancers	Fetal Lung	lung
43	chr6:15595800-15597000	Enhancers	Rectal Mucosa Donor 31	rectum
44	chr6:15596000-15597200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr6:15596000-15598400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr6:15596000-15611400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:15596000-15614400	Weak transcription	Lung	lung
48	chr6:15596200-15597000	Enhancers	Colon Smooth Muscle	Colon
49	chr6:15596200-15597000	Enhancers	Duodenum Smooth Muscle	Duodenum
50	chr6:15596200-15597000	Enhancers	Psoas Muscle	Psoas

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