Variant report

Variant	rs9479246
Chromosome Location	chr6:150274997-150274998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10440891	1.00[AMR][1000 genomes]
rs2038771	1.00[AMR][1000 genomes]
rs2181920	1.00[AMR][1000 genomes]
rs58023690	1.00[AMR][1000 genomes]
rs6942088	1.00[AMR][1000 genomes]
rs73779765	1.00[AMR][1000 genomes]
rs73779766	1.00[AMR][1000 genomes]
rs73779767	1.00[AMR][1000 genomes]
rs73779768	1.00[AMR][1000 genomes]
rs73779769	1.00[AMR][1000 genomes]
rs73779770	1.00[AMR][1000 genomes]
rs9322238	1.00[AMR][1000 genomes]
rs9322239	1.00[AMR][1000 genomes]
rs9478377	1.00[AMR][1000 genomes]
rs9478378	1.00[AMR][1000 genomes]
rs9478379	1.00[AMR][1000 genomes]
rs9479459	1.00[AMR][1000 genomes]
rs9479468	1.00[AMR][1000 genomes]
rs9479477	1.00[AMR][1000 genomes]
rs9766442	1.00[AMR][1000 genomes]
rs9885917	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150274600-150275600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150274800-150275000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
3	chr6:150274800-150275000	Bivalent Enhancer	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:150274800-150275000	Bivalent Enhancer	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr6:150274800-150275000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr6:150274800-150275000	Bivalent Enhancer	Duodenum Mucosa	Duodenum
7	chr6:150274800-150275000	Enhancers	HMEC	breast
8	chr6:150274800-150275000	Flanking Active TSS	K562	blood
9	chr6:150274800-150275800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
10	chr6:150274800-150276000	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 2	blood
11	chr6:150274800-150276000	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
12	chr6:150274800-150276200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr6:150274800-150276200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
14	chr6:150274800-150276600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr6:150274800-150276600	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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