Variant report

Variant	rs9766442
Chromosome Location	chr6:150103753-150103754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:16160895..16163789-chr6:150103318..150105332,2	K562	blood:
2	chr6:150103039..150105538-chr6:150109602..150113560,4	K562	blood:
3	chr6:150103186..150105713-chr6:150110065..150112313,2	MCF-7	breast:
4	chr6:150103642..150105538-chr6:150109602..150112158,2	K562	blood:
5	chr6:150103684..150106554-chr6:150183972..150185592,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120256	Chromatin interaction
ENSG00000179743	Chromatin interaction
ENSG00000268592	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs57322776	1.00[AMR][1000 genomes]
rs58023690	1.00[AMR][1000 genomes]
rs59634271	1.00[AMR][1000 genomes]
rs6908360	1.00[AMR][1000 genomes]
rs9479246	1.00[AMR][1000 genomes]
rs9688860	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1803291	chr6:150018508-150164190	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv886763	chr6:150091219-150174507	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv966666	chr6:150092480-150114661	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Enhancers	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
5	esv1819303	chr6:150093678-150132092	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150072000-150111000	Weak transcription	Fetal Kidney	kidney
2	chr6:150072000-150152000	Weak transcription	Aorta	Aorta
3	chr6:150072400-150104600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:150072400-150111400	Weak transcription	Colonic Mucosa	Colon
5	chr6:150073800-150182400	Weak transcription	Fetal Brain Male	brain
6	chr6:150077000-150115400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150077200-150118400	Weak transcription	Pancreas	Pancrea
8	chr6:150077400-150142400	Weak transcription	Fetal Heart	heart
9	chr6:150077800-150118400	Weak transcription	Psoas Muscle	Psoas
10	chr6:150087200-150154000	Weak transcription	Small Intestine	intestine
11	chr6:150087400-150134000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:150087600-150117400	Weak transcription	Brain Substantia Nigra	brain
13	chr6:150087800-150112000	Weak transcription	Right Ventricle	heart
14	chr6:150087800-150112400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:150088000-150111200	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:150088000-150112000	Weak transcription	Colon Smooth Muscle	Colon
17	chr6:150088000-150123400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr6:150088000-150160400	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr6:150088200-150106000	Strong transcription	Monocytes-CD14+_RO01746	blood
20	chr6:150088200-150115600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr6:150088800-150112000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:150090200-150105800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr6:150090800-150104600	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr6:150090800-150106000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr6:150090800-150106000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:150091000-150106000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr6:150091000-150106000	Strong transcription	Fetal Thymus	thymus
28	chr6:150093200-150103800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:150093400-150111000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr6:150093400-150111200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr6:150093400-150111800	Weak transcription	Spleen	Spleen
32	chr6:150093400-150133400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr6:150093600-150115000	Weak transcription	Hela-S3	cervix
34	chr6:150093600-150135200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:150093800-150104800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:150093800-150115800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr6:150094400-150167200	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:150094800-150111000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr6:150095400-150104600	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:150095400-150112000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:150095600-150105000	Weak transcription	Brain Germinal Matrix	brain
42	chr6:150095800-150111200	Weak transcription	Stomach Smooth Muscle	stomach
43	chr6:150096600-150106000	Strong transcription	HepG2	liver
44	chr6:150097000-150111000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr6:150097200-150104800	Weak transcription	Lung	lung
46	chr6:150097800-150104600	Weak transcription	Ovary	ovary
47	chr6:150097800-150115800	Weak transcription	Esophagus	oesophagus
48	chr6:150098000-150104800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:150098000-150123400	Weak transcription	HSMMtube	muscle
50	chr6:150098000-150144000	Weak transcription	Placenta Amnion	Placenta Amnion

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