Variant report

Variant	rs6908360
Chromosome Location	chr6:150018124-150018125
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150004563..150007128-chr6:150016460..150020712,4	MCF-7	breast:
2	chr6:150016138..150018272-chr6:150049706..150051257,2	K562	blood:
3	chr6:149968836..149971760-chr6:150016076..150018869,3	K562	blood:
4	chr6:150017835..150020860-chr6:150036503..150040749,6	K562	blood:
5	chr6:150016423..150019674-chr6:150021419..150024533,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131023	Chromatin interaction
ENSG00000186625	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56852294	1.00[AMR][1000 genomes]
rs57322776	1.00[AMR][1000 genomes]
rs58023690	1.00[AMR][1000 genomes]
rs59634271	1.00[AMR][1000 genomes]
rs9766442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3475167	chr6:150003006-150086225	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	esv3475168	chr6:150003006-150086225	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149977200-150022600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:149977800-150020600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:149978000-150029200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:149980600-150024800	Strong transcription	Fetal Thymus	thymus
5	chr6:149981200-150018800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr6:149987000-150036800	Weak transcription	Hela-S3	cervix
7	chr6:149997800-150027400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr6:149998000-150020800	Weak transcription	Small Intestine	intestine
9	chr6:149998000-150029800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr6:150000000-150022000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:150005400-150021000	Weak transcription	Stomach Mucosa	stomach
12	chr6:150005400-150029800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr6:150005600-150018200	Weak transcription	A549	lung
14	chr6:150005600-150023000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:150005600-150029600	Weak transcription	Aorta	Aorta
16	chr6:150005600-150030200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:150005600-150030200	Weak transcription	Fetal Heart	heart
18	chr6:150005600-150030400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr6:150005600-150030400	Weak transcription	HSMMtube	muscle
20	chr6:150005600-150037400	Weak transcription	Esophagus	oesophagus
21	chr6:150005600-150037800	Weak transcription	Gastric	stomach
22	chr6:150005800-150020800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:150005800-150027400	Weak transcription	Spleen	Spleen
24	chr6:150007200-150018200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr6:150007400-150023200	Strong transcription	Fetal Muscle Trunk	muscle
26	chr6:150007800-150022200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
27	chr6:150007800-150027400	Weak transcription	Right Ventricle	heart
28	chr6:150007800-150036800	Weak transcription	Brain Germinal Matrix	brain
29	chr6:150008000-150024000	Weak transcription	Psoas Muscle	Psoas
30	chr6:150008200-150022800	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr6:150008200-150030000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:150009000-150024400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr6:150009400-150018800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr6:150009400-150023200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr6:150009400-150023400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr6:150009400-150024800	Strong transcription	Dnd41	blood
37	chr6:150009600-150019400	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr6:150009600-150019600	Strong transcription	Fetal Muscle Leg	muscle
39	chr6:150009600-150023200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr6:150009600-150025200	Strong transcription	Monocytes-CD14+_RO01746	blood
41	chr6:150009800-150020000	Strong transcription	Primary neutrophils fromperipheralblood	blood
42	chr6:150009800-150024800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr6:150010200-150019800	Strong transcription	Primary B cells from peripheral blood	blood
44	chr6:150010600-150018600	Strong transcription	Primary B cells from cord blood	blood
45	chr6:150011400-150023200	Strong transcription	Placenta	Placenta
46	chr6:150011600-150018600	Strong transcription	HUES6 Cell Line	embryonic stem cell
47	chr6:150011800-150018600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
48	chr6:150012000-150020200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:150013600-150023000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
50	chr6:150013600-150037200	Weak transcription	Colonic Mucosa	Colon

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