Variant report

Variant	rs56852294
Chromosome Location	chr6:149829940-149829941
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149829549..149832059-chr6:149838355..149841591,3	K562	blood:
2	chr6:149827622..149830307-chr6:149831697..149834831,3	K562	blood:
3	chr6:149827523..149830271-chr6:149854343..149857106,2	K562	blood:
4	chr6:149827201..149829312-chr6:149829316..149833197,3	K562	blood:
5	chr6:149818918..149821487-chr6:149828653..149831549,2	K562	blood:

Variant related genes	Relation type
ENSG00000131013	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs34532338	1.00[AMR][1000 genomes]
rs34590971	1.00[AMR][1000 genomes]
rs34670837	1.00[AMR][1000 genomes]
rs35400398	1.00[AMR][1000 genomes]
rs35859918	1.00[AMR][1000 genomes]
rs36103023	1.00[AMR][1000 genomes]
rs57322776	1.00[AMR][1000 genomes]
rs59001092	1.00[AMR][1000 genomes]
rs59634271	1.00[AMR][1000 genomes]
rs6908360	1.00[AMR][1000 genomes]
rs73613044	1.00[AMR][1000 genomes]
rs73613101	1.00[AMR][1000 genomes]
rs73614916	1.00[AMR][1000 genomes]
rs73615923	1.00[AMR][1000 genomes]
rs73615924	1.00[AMR][1000 genomes]
rs73615939	1.00[AMR][1000 genomes]
rs73615985	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv1832313	chr6:149789511-149840750	Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149806400-149832000	Weak transcription	HSMMtube	muscle
2	chr6:149806400-149844800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:149806800-149832400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr6:149807000-149832200	Weak transcription	Lung	lung
5	chr6:149807000-149849000	Weak transcription	Gastric	stomach
6	chr6:149807200-149832000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:149807200-149835000	Weak transcription	Spleen	Spleen
8	chr6:149807200-149842600	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr6:149810800-149851600	Weak transcription	Esophagus	oesophagus
10	chr6:149811200-149860600	Weak transcription	Aorta	Aorta
11	chr6:149815600-149845000	Weak transcription	Small Intestine	intestine
12	chr6:149817000-149830800	Weak transcription	Brain Angular Gyrus	brain
13	chr6:149818200-149830400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:149818400-149843800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr6:149818800-149845000	Weak transcription	A549	lung
16	chr6:149819200-149832000	Weak transcription	Stomach Smooth Muscle	stomach
17	chr6:149820400-149831000	Weak transcription	Ovary	ovary
18	chr6:149820400-149831600	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr6:149820400-149832000	Weak transcription	Fetal Heart	heart
20	chr6:149820400-149837400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr6:149820400-149840800	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr6:149820400-149845200	Weak transcription	Hela-S3	cervix
23	chr6:149820400-149849000	Weak transcription	Psoas Muscle	Psoas
24	chr6:149820400-149850200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr6:149820600-149830400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr6:149820600-149831600	Weak transcription	Fetal Stomach	stomach
27	chr6:149820600-149832400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr6:149820600-149832400	Weak transcription	Dnd41	blood
29	chr6:149820600-149835000	Weak transcription	NHEK	skin
30	chr6:149820600-149838400	Weak transcription	Rectal Smooth Muscle	rectum
31	chr6:149820600-149839400	Weak transcription	Thymus	Thymus
32	chr6:149820600-149842600	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:149820600-149847800	Weak transcription	Brain Substantia Nigra	brain
34	chr6:149820600-149851400	Weak transcription	NHLF	lung
35	chr6:149820600-149865200	Weak transcription	Stomach Mucosa	stomach
36	chr6:149820800-149832600	Weak transcription	HUVEC	blood vessel
37	chr6:149820800-149841800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr6:149820800-149848200	Weak transcription	Pancreas	Pancrea
39	chr6:149821200-149835200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr6:149821200-149835200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:149821400-149839800	Weak transcription	HMEC	breast
42	chr6:149821600-149835200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr6:149821600-149837400	Weak transcription	Fetal Kidney	kidney
44	chr6:149822600-149845000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr6:149823400-149839200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr6:149823600-149832200	Weak transcription	Fetal Brain Female	brain
47	chr6:149823800-149851800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:149824200-149834000	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr6:149824200-149842600	Weak transcription	Brain Germinal Matrix	brain
50	chr6:149824200-149846000	Weak transcription	Fetal Brain Male	brain

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