Variant report

Variant	rs73615985
Chromosome Location	chr6:149742802-149742803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149740980..149743677-chr6:149744800..149747765,2	K562	blood:
2	chr6:149742080..149743974-chr6:149748766..149751309,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34532338	1.00[AMR][1000 genomes]
rs34590971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34670837	1.00[AMR][1000 genomes]
rs35400398	1.00[AMR][1000 genomes]
rs35859918	1.00[AMR][1000 genomes]
rs36103023	1.00[AMR][1000 genomes]
rs56852294	1.00[AMR][1000 genomes]
rs57322776	1.00[AMR][1000 genomes]
rs59001092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73613044	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73613101	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73614916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73615939	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:149721800-149743800	Weak transcription	Lung	lung
3	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
5	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
8	chr6:149730600-149744400	Weak transcription	NHDF-Ad	bronchial
9	chr6:149731400-149743800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr6:149731600-149744200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:149731600-149744400	Weak transcription	Brain Anterior Caudate	brain
12	chr6:149731600-149744600	Weak transcription	NHLF	lung
13	chr6:149731600-149745200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr6:149731600-149745200	Weak transcription	Left Ventricle	heart
15	chr6:149731600-149745200	Weak transcription	Rectal Smooth Muscle	rectum
16	chr6:149731800-149744400	Weak transcription	Brain Substantia Nigra	brain
17	chr6:149731800-149744400	Weak transcription	HSMMtube	muscle
18	chr6:149731800-149745200	Weak transcription	Fetal Brain Female	brain
19	chr6:149732000-149744400	Weak transcription	Stomach Smooth Muscle	stomach
20	chr6:149732000-149744600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:149732200-149744400	Weak transcription	Ovary	ovary
22	chr6:149732200-149744400	Weak transcription	Osteobl	bone
23	chr6:149732200-149745000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr6:149732400-149744000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr6:149732400-149744400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr6:149732400-149744400	Weak transcription	Brain Hippocampus Middle	brain
27	chr6:149732400-149745200	Weak transcription	Brain Germinal Matrix	brain
28	chr6:149732600-149743800	Weak transcription	Placenta	Placenta
29	chr6:149732600-149744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr6:149732600-149744600	Weak transcription	Fetal Lung	lung
31	chr6:149732600-149744800	Weak transcription	NH-A	brain
32	chr6:149732600-149745400	Weak transcription	Dnd41	blood
33	chr6:149732800-149744600	Weak transcription	HSMM	muscle
34	chr6:149732800-149744800	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr6:149733200-149744800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:149733400-149744600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:149733400-149744800	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:149733600-149744800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr6:149735000-149744400	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr6:149735400-149744400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr6:149735600-149744200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr6:149735600-149744400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr6:149735600-149744800	Weak transcription	Adipose Nuclei	Adipose
44	chr6:149736200-149744200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr6:149739800-149744800	Weak transcription	Fetal Muscle Leg	muscle
46	chr6:149742000-149745000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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