Variant report

Variant	rs57322776
Chromosome Location	chr6:149958972-149958973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:149956490..149959406-chr6:149962466..149964186,3	K562	blood:
2	chr6:149887413..149889033-chr6:149958089..149960817,2	K562	blood:

Variant related genes	Relation type
ENSG00000055211	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56852294	1.00[AMR][1000 genomes]
rs58023690	1.00[AMR][1000 genomes]
rs59634271	1.00[AMR][1000 genomes]
rs6908360	1.00[AMR][1000 genomes]
rs73615985	1.00[AMR][1000 genomes]
rs9766442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
2	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149915800-149969200	Weak transcription	Gastric	stomach
4	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
5	chr6:149918800-149967600	Weak transcription	NHLF	lung
6	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
8	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:149935000-149967000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:149935200-149959200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr6:149935200-149966200	Weak transcription	Hela-S3	cervix
12	chr6:149935200-149967800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:149935200-149968000	Weak transcription	Brain Angular Gyrus	brain
14	chr6:149935200-149969000	Weak transcription	Small Intestine	intestine
15	chr6:149935400-149968000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr6:149935600-149968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:149935600-149968400	Weak transcription	Esophagus	oesophagus
18	chr6:149935800-149968600	Weak transcription	Aorta	Aorta
19	chr6:149936000-149967000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr6:149936000-149967200	Weak transcription	HMEC	breast
21	chr6:149936000-149968000	Weak transcription	Right Ventricle	heart
22	chr6:149936800-149969000	Weak transcription	Lung	lung
23	chr6:149937400-149968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr6:149938400-149960800	Weak transcription	Fetal Heart	heart
25	chr6:149941400-149967600	Weak transcription	Brain Substantia Nigra	brain
26	chr6:149941400-149967600	Weak transcription	Fetal Brain Male	brain
27	chr6:149941400-149968000	Weak transcription	Brain Hippocampus Middle	brain
28	chr6:149942200-149967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
29	chr6:149943400-149968000	Weak transcription	Brain Cingulate Gyrus	brain
30	chr6:149944600-149959200	Weak transcription	Ovary	ovary
31	chr6:149944600-149964000	Weak transcription	NHDF-Ad	bronchial
32	chr6:149944800-149963800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr6:149944800-149969400	Weak transcription	Spleen	Spleen
34	chr6:149947000-149968200	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr6:149949200-149964200	Weak transcription	Osteobl	bone
36	chr6:149949600-149967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr6:149950000-149959600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr6:149950600-149963400	Weak transcription	Brain Germinal Matrix	brain
39	chr6:149950600-149968000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr6:149950600-149968000	Weak transcription	Brain Anterior Caudate	brain
41	chr6:149950600-149968400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr6:149950800-149964200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr6:149950800-149967200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr6:149950800-149968000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
45	chr6:149950800-149968200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr6:149951200-149959200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:149951200-149963600	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr6:149951200-149967400	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr6:149951200-149968000	Weak transcription	HSMM	muscle
50	chr6:149951400-149967200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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