Variant report

Variant	rs59634271
Chromosome Location	chr6:149964890-149964891
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:149962904..149965459-chr6:150070151..150071735,2	K562	blood:
2	chr6:149964456..149967231-chr6:150038476..150041371,2	MCF-7	breast:
3	chr6:149957420..149961010-chr6:149962666..149965465,3	K562	blood:

Variant related genes	Relation type
ENSG00000120253	Chromatin interaction
ENSG00000131023	Chromatin interaction
ENSG00000186625	Chromatin interaction
ENSG00000120265	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs56852294	1.00[AMR][1000 genomes]
rs57322776	1.00[AMR][1000 genomes]
rs58023690	1.00[AMR][1000 genomes]
rs6908360	1.00[AMR][1000 genomes]
rs9766442	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv289	chr6:149864898-149998818	Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv5534	chr6:149864898-149998818	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv886762	chr6:149866452-150174507	Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
4	esv1792620	chr6:149909491-150083621	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149915600-149968400	Weak transcription	Pancreas	Pancrea
2	chr6:149915600-149969200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr6:149915800-149969200	Weak transcription	Gastric	stomach
4	chr6:149918800-149967600	Weak transcription	HUVEC	blood vessel
5	chr6:149918800-149967600	Weak transcription	NHLF	lung
6	chr6:149924800-149967400	Weak transcription	Colon Smooth Muscle	Colon
7	chr6:149924800-149968000	Weak transcription	Fetal Kidney	kidney
8	chr6:149925200-149967000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr6:149935000-149967000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr6:149935200-149966200	Weak transcription	Hela-S3	cervix
11	chr6:149935200-149967800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:149935200-149968000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:149935200-149969000	Weak transcription	Small Intestine	intestine
14	chr6:149935400-149968000	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr6:149935600-149968000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr6:149935600-149968400	Weak transcription	Esophagus	oesophagus
17	chr6:149935800-149968600	Weak transcription	Aorta	Aorta
18	chr6:149936000-149967000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:149936000-149967200	Weak transcription	HMEC	breast
20	chr6:149936000-149968000	Weak transcription	Right Ventricle	heart
21	chr6:149936800-149969000	Weak transcription	Lung	lung
22	chr6:149937400-149968000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr6:149941400-149967600	Weak transcription	Brain Substantia Nigra	brain
24	chr6:149941400-149967600	Weak transcription	Fetal Brain Male	brain
25	chr6:149941400-149968000	Weak transcription	Brain Hippocampus Middle	brain
26	chr6:149942200-149967600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr6:149943400-149968000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr6:149944800-149969400	Weak transcription	Spleen	Spleen
29	chr6:149947000-149968200	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr6:149949600-149967800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:149950600-149968000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr6:149950600-149968000	Weak transcription	Brain Anterior Caudate	brain
33	chr6:149950600-149968400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:149950800-149967200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:149950800-149968000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr6:149950800-149968200	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr6:149951200-149967400	Weak transcription	HUES6 Cell Line	embryonic stem cell
38	chr6:149951200-149968000	Weak transcription	HSMM	muscle
39	chr6:149951400-149967200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
40	chr6:149952000-149967200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr6:149952200-149967600	Weak transcription	Primary B cells from cord blood	blood
42	chr6:149952200-149968200	Weak transcription	Fetal Intestine Large	intestine
43	chr6:149952400-149967800	Weak transcription	Duodenum Mucosa	Duodenum
44	chr6:149952600-149967600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr6:149953800-149966800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
46	chr6:149954000-149967200	Weak transcription	Fetal Brain Female	brain
47	chr6:149954000-149967400	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr6:149954000-149968000	Weak transcription	Rectal Mucosa Donor 31	rectum
49	chr6:149954000-149968200	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr6:149954200-149967400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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