Variant report

Variant	rs34532338
Chromosome Location	chr6:149731141-149731142
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs34590971	1.00[AMR][1000 genomes]
rs34670837	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35400398	1.00[AMR][1000 genomes]
rs35859918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36103023	1.00[AMR][1000 genomes]
rs56852294	1.00[AMR][1000 genomes]
rs56918658	1.00[AMR][1000 genomes]
rs59001092	1.00[AMR][1000 genomes]
rs73613044	1.00[AMR][1000 genomes]
rs73613101	1.00[AMR][1000 genomes]
rs73614916	1.00[AMR][1000 genomes]
rs73615923	1.00[AMR][1000 genomes]
rs73615924	1.00[AMR][1000 genomes]
rs73615939	1.00[AMR][1000 genomes]
rs73615985	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024106	chr6:149622349-149745053	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv522875	chr6:149643709-149762537	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
3	nsv530444	chr6:149654540-149848997	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149700400-149732400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:149700800-149732800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr6:149701400-149734200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:149701600-149733600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:149705200-149734600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:149709400-149733000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr6:149709600-149750200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:149713800-149735400	Weak transcription	Small Intestine	intestine
9	chr6:149715400-149732600	Strong transcription	Dnd41	blood
10	chr6:149715600-149733600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr6:149717400-149733200	Strong transcription	HUES64 Cell Line	embryonic stem cell
12	chr6:149717800-149732200	Strong transcription	GM12878-XiMat	blood
13	chr6:149718800-149732800	Strong transcription	HSMM	muscle
14	chr6:149721800-149732800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:149721800-149734000	Weak transcription	Right Ventricle	heart
16	chr6:149721800-149743800	Weak transcription	Lung	lung
17	chr6:149721800-149744800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr6:149721800-149745200	Weak transcription	Pancreas	Pancrea
19	chr6:149722000-149745000	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:149725200-149733200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:149725200-149744600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr6:149725600-149734400	Weak transcription	HepG2	liver
23	chr6:149726600-149733400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr6:149727600-149733400	Strong transcription	Primary hematopoietic stem cells	blood
25	chr6:149728000-149731800	Weak transcription	Psoas Muscle	Psoas
26	chr6:149728200-149734000	Strong transcription	Monocytes-CD14+_RO01746	blood
27	chr6:149728200-149744600	Weak transcription	Fetal Intestine Small	intestine
28	chr6:149728800-149733400	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr6:149729200-149732400	Strong transcription	Primary B cells from cord blood	blood
30	chr6:149729200-149732600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr6:149729400-149733400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr6:149729400-149733600	Strong transcription	Primary monocytes fromperipheralblood	blood
33	chr6:149729400-149734000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr6:149729800-149731600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr6:149729800-149732000	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr6:149729800-149732600	Strong transcription	NH-A	brain
37	chr6:149729800-149735000	Enhancers	Fetal Heart	heart
38	chr6:149730000-149732000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr6:149730000-149732800	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr6:149730000-149732800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr6:149730000-149733200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr6:149730200-149731200	Strong transcription	NHEK	skin
43	chr6:149730200-149732200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
44	chr6:149730200-149732200	Strong transcription	Osteobl	bone
45	chr6:149730200-149732400	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr6:149730200-149732600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
47	chr6:149730200-149732600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr6:149730200-149732600	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr6:149730200-149733000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
50	chr6:149730200-149733000	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood

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