Variant report

Variant	rs56918658
Chromosome Location	chr6:149538385-149538386
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr6:149538362-149539113	GM19099	blood:	n/a	n/a

Variant related genes	Relation type
TAB2	TF binding region
ENSG00000228408	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs34532338	1.00[AMR][1000 genomes]
rs34590971	1.00[AMR][1000 genomes]
rs34670837	1.00[AMR][1000 genomes]
rs35400398	1.00[AMR][1000 genomes]
rs35859918	1.00[AMR][1000 genomes]
rs36103023	1.00[AMR][1000 genomes]
rs56961470	0.89[ASN][1000 genomes]
rs57019685	0.89[ASN][1000 genomes]
rs58714623	0.89[ASN][1000 genomes]
rs59001092	1.00[AMR][1000 genomes]
rs59335772	0.89[ASN][1000 genomes]
rs60875049	0.89[ASN][1000 genomes]
rs73613044	1.00[AMR][1000 genomes]
rs73613101	1.00[AMR][1000 genomes]
rs73614916	1.00[AMR][1000 genomes]
rs73615923	1.00[AMR][1000 genomes]
rs73615924	1.00[AMR][1000 genomes]
rs73615939	1.00[AMR][1000 genomes]
rs73779077	0.89[ASN][1000 genomes]
rs73779088	0.89[ASN][1000 genomes]
rs9918359	0.89[ASN][1000 genomes]
rs9918444	0.89[ASN][1000 genomes]
rs9918483	0.89[ASN][1000 genomes]
rs9918484	0.89[ASN][1000 genomes]
rs9918485	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149533200-149549400	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr6:149534200-149547600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:149534400-149545800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr6:149534600-149538800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr6:149534600-149539000	Weak transcription	Colon Smooth Muscle	Colon
6	chr6:149534800-149538600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:149534800-149542200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr6:149534800-149542200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:149534800-149548600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr6:149535000-149538800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:149535000-149542600	Weak transcription	Brain Anterior Caudate	brain
12	chr6:149535000-149546800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:149535200-149539600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr6:149535200-149542600	Weak transcription	HSMM	muscle
15	chr6:149535400-149538600	Weak transcription	Brain Hippocampus Middle	brain
16	chr6:149535400-149539000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:149535400-149539400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
18	chr6:149535400-149539600	Weak transcription	Fetal Lung	lung
19	chr6:149535600-149538600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:149535600-149538800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr6:149535600-149538800	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr6:149535800-149539600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr6:149536400-149538800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr6:149536800-149538600	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr6:149537200-149538400	Enhancers	H1 Cell Line	embryonic stem cell
26	chr6:149537200-149538800	Enhancers	HUES48 Cell Line	embryonic stem cell
27	chr6:149537400-149538600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr6:149537400-149538800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr6:149537400-149542400	Weak transcription	Fetal Heart	heart
30	chr6:149537800-149538800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:149537800-149540200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr6:149538000-149538400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
33	chr6:149538000-149538600	Enhancers	H9 Cell Line	embryonic stem cell
34	chr6:149538200-149540400	Enhancers	GM12878-XiMat	blood
35	chr6:149538200-149544600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr6:149538200-149548600	Weak transcription	HUES64 Cell Line	embryonic stem cell

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