Variant report

Variant	rs9918483
Chromosome Location	chr6:149524474-149524475
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs56918658	0.89[ASN][1000 genomes]
rs56961470	1.00[ASN][1000 genomes]
rs57019685	1.00[ASN][1000 genomes]
rs58714623	1.00[ASN][1000 genomes]
rs59335772	1.00[ASN][1000 genomes]
rs60875049	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73779077	1.00[ASN][1000 genomes]
rs73779088	1.00[ASN][1000 genomes]
rs7743886	0.83[AFR][1000 genomes]
rs7748833	1.00[CHB][hapmap]
rs9918359	1.00[ASN][1000 genomes]
rs9918444	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9918484	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9918485	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149522800-149529000	Weak transcription	Fetal Heart	heart
2	chr6:149523200-149524600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:149523200-149525000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr6:149523600-149524600	Enhancers	Primary hematopoietic stem cells	blood
5	chr6:149523600-149524800	Enhancers	Fetal Thymus	thymus
6	chr6:149523600-149529200	Weak transcription	Brain Germinal Matrix	brain
7	chr6:149524000-149524800	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:149524000-149524800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr6:149524000-149524800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:149524000-149525000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr6:149524200-149524800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:149524400-149524800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:149524400-149524800	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr6:149524400-149525000	Enhancers	Primary T killer memory cells from peripheral blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links