Variant report

No.	Distal block	Cell Line	Cell type
1	chr6:149523368..149525032-chr6:149525284..149527153,2	MCF-7	breast:
2	chr6:149518839..149521510-chr6:149526306..149528995,3	MCF-7	breast:
3	chr6:149525520..149529073-chr6:149530163..149532757,3	K562	blood:
4	chr6:149524074..149527027-chr6:149528624..149531040,2	K562	blood:

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11963241	1.00[AMR][1000 genomes]
rs11966485	1.00[AMR][1000 genomes]
rs11968255	1.00[AMR][1000 genomes]
rs3934769	1.00[AMR][1000 genomes]
rs55783108	1.00[AMR][1000 genomes]
rs56014076	1.00[AMR][1000 genomes]
rs56361228	1.00[AMR][1000 genomes]
rs56918658	0.89[ASN][1000 genomes]
rs56961470	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57019685	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs57383534	1.00[AMR][1000 genomes]
rs58349060	1.00[AMR][1000 genomes]
rs58714623	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59335772	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs59877640	1.00[AMR][1000 genomes]
rs60875049	1.00[ASN][1000 genomes]
rs73779021	1.00[AMR][1000 genomes]
rs73779077	1.00[ASN][1000 genomes]
rs73779079	1.00[AMR][1000 genomes]
rs73779080	1.00[AMR][1000 genomes]
rs73779081	1.00[AMR][1000 genomes]
rs73779082	1.00[AMR][1000 genomes]
rs73779083	1.00[AMR][1000 genomes]
rs73779084	1.00[AMR][1000 genomes]
rs73779085	1.00[AMR][1000 genomes]
rs73779088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73779092	1.00[AMR][1000 genomes]
rs73779094	1.00[AMR][1000 genomes]
rs73779095	1.00[AMR][1000 genomes]
rs73779097	1.00[AMR][1000 genomes]
rs73779100	1.00[AMR][1000 genomes]
rs73781710	1.00[AMR][1000 genomes]
rs7748833	1.00[CHB][hapmap]
rs9918444	1.00[ASN][1000 genomes]
rs9918483	1.00[ASN][1000 genomes]
rs9918484	1.00[ASN][1000 genomes]
rs9918485	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149522800-149529000	Weak transcription	Fetal Heart	heart
2	chr6:149523600-149529200	Weak transcription	Brain Germinal Matrix	brain
3	chr6:149524600-149530800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:149525000-149531000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:149526000-149528000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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