Variant report

Variant	rs59877640
Chromosome Location	chr6:149519939-149519940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11963241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3934769	1.00[AMR][1000 genomes]
rs55783108	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56014076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56961470	1.00[AMR][1000 genomes]
rs57019685	1.00[AMR][1000 genomes]
rs57383534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58714623	1.00[AMR][1000 genomes]
rs59335772	1.00[AMR][1000 genomes]
rs73779021	1.00[AMR][1000 genomes]
rs73779079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779083	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779084	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779088	1.00[AMR][1000 genomes]
rs73779092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9918359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149518200-149521400	Weak transcription	Fetal Heart	heart
2	chr6:149519800-149520000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links