Variant report

Variant	rs55783108
Chromosome Location	chr6:149523397-149523398
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11963241	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966485	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968255	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3934769	1.00[AMR][1000 genomes]
rs56014076	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56961470	1.00[AMR][1000 genomes]
rs57019685	1.00[AMR][1000 genomes]
rs57383534	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58714623	1.00[AMR][1000 genomes]
rs59335772	1.00[AMR][1000 genomes]
rs59877640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779021	1.00[AMR][1000 genomes]
rs73779079	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779080	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779081	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779083	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779084	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779085	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779088	1.00[AMR][1000 genomes]
rs73779092	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779094	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779100	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9918359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149521600-149523600	Enhancers	Brain Germinal Matrix	brain
2	chr6:149522200-149523400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr6:149522800-149529000	Weak transcription	Fetal Heart	heart
4	chr6:149523200-149524000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:149523200-149524000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:149523200-149524600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr6:149523200-149525000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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