Variant report

Variant	rs73779084
Chromosome Location	chr6:149522239-149522240
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs11963241	1.00[AMR][1000 genomes]
rs11966485	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11968255	1.00[AMR][1000 genomes]
rs3934769	1.00[AMR][1000 genomes]
rs55783108	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56014076	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361228	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56961470	1.00[AMR][1000 genomes]
rs57019685	1.00[AMR][1000 genomes]
rs57383534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349060	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58714623	1.00[AMR][1000 genomes]
rs59335772	1.00[AMR][1000 genomes]
rs59877640	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779021	1.00[AMR][1000 genomes]
rs73779079	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779080	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779082	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779088	1.00[AMR][1000 genomes]
rs73779092	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779094	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779095	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779097	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779100	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781710	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9918359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149521200-149523200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:149521400-149522800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:149521400-149522800	Enhancers	Fetal Heart	heart
4	chr6:149521400-149523200	Enhancers	Brain Hippocampus Middle	brain
5	chr6:149521600-149522800	Enhancers	Brain Anterior Caudate	brain
6	chr6:149521600-149523600	Enhancers	Brain Germinal Matrix	brain
7	chr6:149521800-149522600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr6:149521800-149523200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr6:149521800-149523200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:149522000-149522600	Enhancers	Brain Cingulate Gyrus	brain
11	chr6:149522200-149522600	Enhancers	Fetal Brain Male	brain
12	chr6:149522200-149522800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:149522200-149523200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr6:149522200-149523400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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