Variant report

Variant	rs11963241
Chromosome Location	chr6:149496011-149496012
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11966485	1.00[AMR][1000 genomes]
rs11968255	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3934769	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55783108	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56014076	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56361228	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56961470	1.00[AMR][1000 genomes]
rs57019685	1.00[AMR][1000 genomes]
rs57383534	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58349060	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58714623	1.00[AMR][1000 genomes]
rs59335772	1.00[AMR][1000 genomes]
rs59877640	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779021	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779079	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779080	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779081	1.00[AMR][1000 genomes]
rs73779082	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779083	1.00[AMR][1000 genomes]
rs73779084	1.00[AMR][1000 genomes]
rs73779085	1.00[AMR][1000 genomes]
rs73779088	1.00[AMR][1000 genomes]
rs73779092	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779094	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779095	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73779100	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73781710	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9498259	1.00[MEX][hapmap]
rs9918359	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032319	chr6:149271433-149550525	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv538470	chr6:149271433-149550525	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1024776	chr6:149398652-149654593	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:149492200-149503600	Weak transcription	Right Atrium	heart
2	chr6:149492800-149497600	Weak transcription	Liver	Liver
3	chr6:149495800-149496400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:149495800-149496400	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:149496000-149496400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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