Variant report

Variant	rs9480216
Chromosome Location	chr6:150639162-150639163
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11753311	1.00[ASN][1000 genomes]
rs635178	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830843	chr6:150517411-150691173	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	esv2763602	chr6:150581193-150720666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv524641	chr6:150625572-150644030	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150619600-150641200	Weak transcription	Right Atrium	heart
2	chr6:150634600-150639400	Weak transcription	Psoas Muscle	Psoas
3	chr6:150635800-150641200	Weak transcription	Fetal Lung	lung
4	chr6:150636400-150640600	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr6:150636400-150640800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:150636600-150641000	Weak transcription	Right Ventricle	heart
7	chr6:150638000-150639800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:150638000-150642200	Enhancers	Fetal Muscle Leg	muscle
9	chr6:150638200-150641200	Weak transcription	Fetal Heart	heart
10	chr6:150638400-150641200	Weak transcription	Left Ventricle	heart
11	chr6:150638600-150640000	Enhancers	K562	blood
12	chr6:150639000-150641000	Enhancers	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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