Variant report

Variant	rs9480930
Chromosome Location	chr6:109652817-109652818
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12529733	0.84[EUR][1000 genomes]
rs9487064	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5435	chr6:109633035-109669127	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs9480930	ZBTB24	Cis_1M	lymphoblastoid	RTeQTL
rs9480930	RP11-425D10.10	cis	Skin Sun Exposed Lower leg	GTEx
rs9480930	RP11-425D10.10	cis	Esophagus Mucosa	GTEx

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109629600-109654000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:109641000-109653600	Weak transcription	Small Intestine	intestine
3	chr6:109644600-109675200	Weak transcription	Primary T cells from cord blood	blood
4	chr6:109644800-109657400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr6:109645400-109653600	Weak transcription	Spleen	Spleen
6	chr6:109645400-109662400	Weak transcription	Aorta	Aorta
7	chr6:109649200-109654000	Weak transcription	K562	blood
8	chr6:109649600-109653800	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr6:109650200-109653000	Weak transcription	Fetal Intestine Large	intestine
10	chr6:109650200-109653600	Weak transcription	HepG2	liver
11	chr6:109650200-109653800	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:109650600-109653000	Weak transcription	Fetal Intestine Small	intestine
13	chr6:109651600-109653600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
14	chr6:109651600-109654600	Enhancers	Stomach Mucosa	stomach
15	chr6:109651800-109653600	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr6:109651800-109653800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:109652000-109653600	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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