Variant report

Variant	rs9480961
Chromosome Location	chr6:109778738-109778739
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12333297	0.82[YRI][hapmap]
rs9480964	0.82[YRI][hapmap]
rs9487114	0.82[YRI][hapmap]
rs9487117	0.82[YRI][hapmap]
rs9487120	1.00[YRI][hapmap]
rs9487121	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3395145	chr6:109775784-109778832	Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109775800-109778800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:109775800-109778800	Active TSS	Psoas Muscle	Psoas
3	chr6:109777200-109778800	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
4	chr6:109777400-109778800	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
5	chr6:109777400-109778800	Flanking Active TSS	HSMM	muscle
6	chr6:109777400-109778800	Flanking Active TSS	NHEK	skin
7	chr6:109777400-109779000	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:109777600-109778800	Flanking Active TSS	Fetal Lung	lung
9	chr6:109777600-109778800	Flanking Active TSS	HSMMtube	muscle
10	chr6:109777600-109779000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
11	chr6:109777600-109779000	Flanking Active TSS	Duodenum Mucosa	Duodenum
12	chr6:109777600-109779200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr6:109777600-109779200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:109777600-109780600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:109777600-109780600	Flanking Active TSS	GM12878-XiMat	blood
16	chr6:109777600-109780800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr6:109777600-109781000	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:109777600-109781000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
19	chr6:109777600-109782000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr6:109777600-109783200	Weak transcription	Hela-S3	cervix
21	chr6:109777800-109779000	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr6:109777800-109779000	Enhancers	Left Ventricle	heart
23	chr6:109777800-109779000	Enhancers	Right Ventricle	heart
24	chr6:109777800-109779200	Enhancers	Placenta	Placenta
25	chr6:109777800-109779200	Flanking Active TSS	NHDF-Ad	bronchial
26	chr6:109777800-109779800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:109777800-109779800	Weak transcription	Lung	lung
28	chr6:109777800-109780800	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr6:109777800-109780800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr6:109777800-109781600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr6:109777800-109782400	Weak transcription	Dnd41	blood
32	chr6:109777800-109786800	Weak transcription	Gastric	stomach
33	chr6:109777800-109786800	Weak transcription	Ovary	ovary
34	chr6:109778000-109778800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr6:109778000-109778800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr6:109778000-109778800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr6:109778000-109778800	Enhancers	Small Intestine	intestine
38	chr6:109778000-109779000	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr6:109778000-109779000	Weak transcription	Thymus	Thymus
40	chr6:109778000-109779200	Enhancers	H1 Cell Line	embryonic stem cell
41	chr6:109778000-109779200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr6:109778000-109779200	Enhancers	Brain Substantia Nigra	brain
43	chr6:109778000-109780400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr6:109778000-109780600	Enhancers	Primary hematopoietic stem cells short term culture	blood
45	chr6:109778000-109780600	Enhancers	K562	blood
46	chr6:109778000-109780800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
47	chr6:109778000-109781000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
48	chr6:109778000-109783000	Weak transcription	HMEC	breast
49	chr6:109778000-109783000	Weak transcription	Osteobl	bone
50	chr6:109778000-109783200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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