Variant report

Variant	rs12333297
Chromosome Location	chr6:109785096-109785097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109779059..109781769-chr6:109783298..109786186,2	MCF-7	breast:
2	chr6:109782109..109785151-chr6:109785309..109787656,3	MCF-7	breast:
3	chr6:109775528..109778413-chr6:109783315..109785421,2	MCF-7	breast:
4	chr6:109783199..109786960-chr6:109788054..109790387,4	K562	blood:
5	chr6:109784664..109786892-chr6:109802855..109804831,2	MCF-7	breast:
6	chr6:109783071..109786198-chr6:109802542..109804576,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135596	Chromatin interaction
ENSG00000112365	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12332859	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232447	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232451	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480927	0.82[ASW][hapmap]
rs9480960	0.81[AFR][1000 genomes]
rs9480961	0.82[YRI][hapmap]
rs9480964	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487111	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487112	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487113	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487114	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487116	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487117	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487118	1.00[AMR][1000 genomes]
rs9487120	1.00[ASW][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs9487121	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487122	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487123	1.00[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12333297	ZBTB24	cis	multi-tissue	Pritchard

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109777800-109786800	Weak transcription	Gastric	stomach
2	chr6:109777800-109786800	Weak transcription	Ovary	ovary
3	chr6:109778000-109786800	Weak transcription	Pancreas	Pancrea
4	chr6:109778000-109786800	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr6:109778200-109785600	Weak transcription	Fetal Brain Female	brain
6	chr6:109778200-109786600	Weak transcription	Fetal Heart	heart
7	chr6:109778200-109786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:109778200-109786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:109778200-109786800	Weak transcription	Fetal Brain Male	brain
10	chr6:109778200-109787000	Weak transcription	Colon Smooth Muscle	Colon
11	chr6:109778400-109786800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr6:109778400-109787000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
14	chr6:109778800-109785600	Weak transcription	Brain Angular Gyrus	brain
15	chr6:109778800-109786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
17	chr6:109779000-109786600	Weak transcription	Brain Germinal Matrix	brain
18	chr6:109779000-109786800	Weak transcription	Aorta	Aorta
19	chr6:109779000-109786800	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr6:109779000-109787000	Weak transcription	Esophagus	oesophagus
21	chr6:109779000-109787000	Weak transcription	Right Atrium	heart
22	chr6:109779000-109787000	Weak transcription	Right Ventricle	heart
23	chr6:109779200-109786800	Weak transcription	Psoas Muscle	Psoas
24	chr6:109779400-109786600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr6:109779400-109786800	Weak transcription	Fetal Intestine Small	intestine
26	chr6:109779600-109785600	Weak transcription	NHLF	lung
27	chr6:109780200-109786800	Weak transcription	Spleen	Spleen
28	chr6:109780400-109785800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr6:109780600-109785600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr6:109780600-109785600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr6:109780600-109785800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:109780600-109786400	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr6:109780600-109800400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr6:109780800-109785600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr6:109780800-109785600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:109781200-109785200	Weak transcription	Stomach Mucosa	stomach
37	chr6:109781400-109802200	Strong transcription	HSMM	muscle
38	chr6:109781800-109785600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr6:109782000-109785200	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr6:109782000-109785600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr6:109782000-109798800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr6:109782000-109799000	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr6:109782200-109785400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr6:109782200-109788000	Strong transcription	Primary B cells from cord blood	blood
45	chr6:109782200-109792400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr6:109782400-109785600	Strong transcription	Primary T helper cells fromperipheralblood	blood
47	chr6:109782400-109785800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr6:109782400-109786600	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr6:109782400-109787000	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr6:109782400-109787000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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