Variant report

Variant	rs9487116
Chromosome Location	chr6:109781934-109781935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr6:109781650-109782003	HepG2	liver:	n/a	n/a
2	MAFK	chr6:109781783-109782036	HepG2	liver:	n/a	n/a
3	ZNF384	chr6:109781463-109782049	GM12878	blood:	n/a	n/a
4	FOXA1	chr6:109781708-109781979	HepG2	liver:	n/a	n/a
5	MAFK	chr6:109781710-109782032	IMR90	lung:	n/a	n/a
6	FOXA2	chr6:109781695-109781939	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:109779538..109782087-chr6:109794538..109796974,3	K562	blood:
2	chr6:109769577..109771302-chr6:109781887..109784525,2	MCF-7	breast:
3	chr6:109704063..109706352-chr6:109779634..109782625,2	K562	blood:

Variant related genes	Relation type
MICAL1	TF binding region
ENSG00000135596	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12332859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480960	0.90[AFR][1000 genomes]
rs9480964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487118	1.00[AMR][1000 genomes]
rs9487120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109777600-109782000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr6:109777600-109783200	Weak transcription	Hela-S3	cervix
3	chr6:109777800-109782400	Weak transcription	Dnd41	blood
4	chr6:109777800-109786800	Weak transcription	Gastric	stomach
5	chr6:109777800-109786800	Weak transcription	Ovary	ovary
6	chr6:109778000-109783000	Weak transcription	HMEC	breast
7	chr6:109778000-109783000	Weak transcription	Osteobl	bone
8	chr6:109778000-109783200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:109778000-109786800	Weak transcription	Pancreas	Pancrea
10	chr6:109778000-109786800	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr6:109778200-109782000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:109778200-109782400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:109778200-109782400	Weak transcription	Fetal Kidney	kidney
14	chr6:109778200-109782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:109778200-109783200	Weak transcription	Stomach Smooth Muscle	stomach
16	chr6:109778200-109784200	Weak transcription	Fetal Stomach	stomach
17	chr6:109778200-109785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr6:109778200-109785600	Weak transcription	Fetal Brain Female	brain
19	chr6:109778200-109786600	Weak transcription	Fetal Heart	heart
20	chr6:109778200-109786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr6:109778200-109786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr6:109778200-109786800	Weak transcription	Fetal Brain Male	brain
23	chr6:109778200-109787000	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:109778400-109782400	Weak transcription	HUVEC	blood vessel
25	chr6:109778400-109783000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:109778400-109783000	Weak transcription	HepG2	liver
27	chr6:109778400-109783200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr6:109778400-109786800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr6:109778400-109787000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:109778400-109791400	Weak transcription	Colonic Mucosa	Colon
31	chr6:109778600-109782000	Enhancers	Primary B cells from peripheral blood	blood
32	chr6:109778600-109782200	Enhancers	Fetal Intestine Large	intestine
33	chr6:109778600-109782400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr6:109778600-109782400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:109778600-109782400	Weak transcription	Liver	Liver
36	chr6:109778600-109782600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr6:109778600-109782600	Weak transcription	A549	lung
38	chr6:109778600-109782600	Weak transcription	NH-A	brain
39	chr6:109778800-109782600	Weak transcription	Fetal Muscle Trunk	muscle
40	chr6:109778800-109783000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr6:109778800-109785600	Weak transcription	Brain Angular Gyrus	brain
42	chr6:109778800-109786800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr6:109778800-109798800	Weak transcription	Small Intestine	intestine
44	chr6:109779000-109782000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr6:109779000-109782400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr6:109779000-109782600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr6:109779000-109782600	Weak transcription	Brain Anterior Caudate	brain
48	chr6:109779000-109783000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
49	chr6:109779000-109783400	Weak transcription	Left Ventricle	heart
50	chr6:109779000-109786600	Weak transcription	Brain Germinal Matrix	brain

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