Variant report

Variant	rs9487112
Chromosome Location	chr6:109779655-109779656
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109779538..109782087-chr6:109794538..109796974,3	K562	blood:
2	chr6:109779059..109781769-chr6:109783298..109786186,2	MCF-7	breast:
3	chr6:109778593..109780391-chr6:109793154..109794770,2	K562	blood:
4	chr6:109704063..109706352-chr6:109779634..109782625,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12332859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12333297	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232447	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2232451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9480960	0.90[AFR][1000 genomes]
rs9480964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487117	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487118	1.00[AMR][1000 genomes]
rs9487120	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9487123	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109777600-109780600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr6:109777600-109780600	Flanking Active TSS	GM12878-XiMat	blood
3	chr6:109777600-109780800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:109777600-109781000	Enhancers	Primary T cells fromperipheralblood	blood
5	chr6:109777600-109781000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:109777600-109782000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr6:109777600-109783200	Weak transcription	Hela-S3	cervix
8	chr6:109777800-109779800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr6:109777800-109779800	Weak transcription	Lung	lung
10	chr6:109777800-109780800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:109777800-109780800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:109777800-109781600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:109777800-109782400	Weak transcription	Dnd41	blood
14	chr6:109777800-109786800	Weak transcription	Gastric	stomach
15	chr6:109777800-109786800	Weak transcription	Ovary	ovary
16	chr6:109778000-109780400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr6:109778000-109780600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr6:109778000-109780600	Enhancers	K562	blood
19	chr6:109778000-109780800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr6:109778000-109781000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr6:109778000-109783000	Weak transcription	HMEC	breast
22	chr6:109778000-109783000	Weak transcription	Osteobl	bone
23	chr6:109778000-109783200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr6:109778000-109786800	Weak transcription	Pancreas	Pancrea
25	chr6:109778000-109786800	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr6:109778200-109779800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr6:109778200-109780200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr6:109778200-109780600	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr6:109778200-109780600	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr6:109778200-109780600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr6:109778200-109780800	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr6:109778200-109781800	Enhancers	Primary B cells from cord blood	blood
33	chr6:109778200-109782000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr6:109778200-109782400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr6:109778200-109782400	Weak transcription	Fetal Kidney	kidney
36	chr6:109778200-109782600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
37	chr6:109778200-109783200	Weak transcription	Stomach Smooth Muscle	stomach
38	chr6:109778200-109784200	Weak transcription	Fetal Stomach	stomach
39	chr6:109778200-109785000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:109778200-109785600	Weak transcription	Fetal Brain Female	brain
41	chr6:109778200-109786600	Weak transcription	Fetal Heart	heart
42	chr6:109778200-109786800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:109778200-109786800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:109778200-109786800	Weak transcription	Fetal Brain Male	brain
45	chr6:109778200-109787000	Weak transcription	Colon Smooth Muscle	Colon
46	chr6:109778400-109780000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
47	chr6:109778400-109780400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr6:109778400-109781200	Enhancers	Primary T helper cells fromperipheralblood	blood
49	chr6:109778400-109781200	Enhancers	Stomach Mucosa	stomach
50	chr6:109778400-109782400	Weak transcription	HUVEC	blood vessel

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