Variant report

Variant	rs9482177
Chromosome Location	chr6:121899251-121899252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs4245512	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4245513	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4946578	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4946579	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914026	0.82[ASN][1000 genomes]
rs7769602	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9387970	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9490323	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9482177	TDRKH	trans	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121895400-121899800	Weak transcription	Small Intestine	intestine
2	chr6:121895400-121905400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:121895800-121902400	Weak transcription	Ovary	ovary
4	chr6:121895800-121905400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr6:121898800-121900800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr6:121898800-121900800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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