Variant report

Variant	rs4946579
Chromosome Location	chr6:121895398-121895399
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs4245510	0.84[AFR][1000 genomes]
rs4245512	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4245513	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946578	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6906692	0.81[EUR][1000 genomes]
rs6914026	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6932915	0.84[AFR][1000 genomes]
rs7749923	0.84[EUR][1000 genomes]
rs7769602	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7771244	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9387970	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9482177	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9490323	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3432329	chr6:121895353-121897601	Flanking Active TSS Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121892400-121895800	Enhancers	Fetal Intestine Large	intestine
2	chr6:121892800-121895800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:121892800-121896000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:121893600-121895800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr6:121893800-121895400	Enhancers	Small Intestine	intestine
6	chr6:121893800-121895600	Enhancers	Fetal Intestine Small	intestine
7	chr6:121894200-121895800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:121894400-121895600	Enhancers	Hela-S3	cervix
9	chr6:121894400-121895600	Enhancers	Osteobl	bone
10	chr6:121894400-121895800	Enhancers	HUVEC	blood vessel
11	chr6:121894600-121895400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121894600-121895400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:121894600-121895400	Enhancers	Duodenum Smooth Muscle	Duodenum
14	chr6:121894600-121895400	Enhancers	NH-A	brain
15	chr6:121894600-121895600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr6:121894600-121895600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
17	chr6:121894600-121895800	Enhancers	Ovary	ovary
18	chr6:121894800-121895600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr6:121894800-121895600	Enhancers	Dnd41	blood
20	chr6:121894800-121895800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:121895000-121895400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:121895000-121895400	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr6:121895000-121895400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr6:121895000-121895400	Enhancers	Aorta	Aorta
25	chr6:121895000-121895400	Enhancers	NHDF-Ad	bronchial
26	chr6:121895000-121895600	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr6:121895000-121895600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr6:121895000-121895800	Enhancers	Left Ventricle	heart
29	chr6:121895200-121895600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
30	chr6:121895200-121895600	Enhancers	Adipose Nuclei	Adipose
31	chr6:121895200-121895600	Enhancers	Duodenum Mucosa	Duodenum
32	chr6:121895200-121895600	Enhancers	Placenta	Placenta
33	chr6:121895200-121895600	Enhancers	Lung	lung
34	chr6:121895200-121895600	Enhancers	Right Atrium	heart
35	chr6:121895200-121895600	Enhancers	Stomach Smooth Muscle	stomach
36	chr6:121895200-121895600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
37	chr6:121895200-121895800	Enhancers	Brain Substantia Nigra	brain
38	chr6:121895200-121895800	Enhancers	Right Ventricle	heart
39	chr6:121895200-121896000	Enhancers	Primary monocytes fromperipheralblood	blood

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