Variant report

Variant	rs6932915
Chromosome Location	chr6:121898396-121898397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12208477	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4245510	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4245511	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4560674	0.90[ASN][1000 genomes]
rs4945689	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4946577	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4946578	0.86[AFR][1000 genomes]
rs4946579	0.84[AFR][1000 genomes]
rs6911887	0.85[ASN][1000 genomes]
rs6929186	0.85[ASN][1000 genomes]
rs6929781	0.84[ASN][1000 genomes]
rs6940732	0.85[ASN][1000 genomes]
rs7770103	0.82[ASN][1000 genomes]
rs9372658	0.81[ASN][1000 genomes]
rs9375041	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9385201	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9387972	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9398641	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9401414	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9401415	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9482173	0.85[ASN][1000 genomes]
rs9482174	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121895400-121899800	Weak transcription	Small Intestine	intestine
2	chr6:121895400-121905400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr6:121895800-121898800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:121895800-121902400	Weak transcription	Ovary	ovary
5	chr6:121895800-121905400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:121896000-121898800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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