Variant report

Variant	rs6911887
Chromosome Location	chr6:121864983-121864984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr6:121864688-121865070	Hela-S3	cervix:	n/a	n/a
2	STAT3	chr6:121864857-121865054	MCF10A-Er-Src	breast:	n/a	n/a
3	GATA3	chr6:121864722-121865249	SK-N-SH	brain:	n/a	chr6:121864965-121864975 chr6:121864804-121864813 chr6:121864888-121864898 chr6:121865046-121865055
4	STAT3	chr6:121864829-121865160	MCF10A-Er-Src	breast:	n/a	n/a
5	FOS	chr6:121864640-121865206	HUVEC	blood vessel:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
6	FOSL2	chr6:121864682-121865011	A549	lung:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
7	FOS	chr6:121864652-121865203	MCF10A-Er-Src	breast:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
8	TCF12	chr6:121864588-121865333	SK-N-SH	brain:	n/a	n/a
9	FOS	chr6:121864621-121865203	MCF10A-Er-Src	breast:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
10	NFIC	chr6:121864599-121865222	SK-N-SH	brain:	n/a	n/a
11	FOSL2	chr6:121864530-121865199	SK-N-SH	brain:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
12	JUND	chr6:121864669-121865141	Hela-S3	cervix:	n/a	chr6:121864801-121864812 chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
13	JUND	chr6:121864618-121865259	SK-N-SH	brain:	n/a	chr6:121864801-121864812 chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
14	FOS	chr6:121864648-121865178	MCF10A-Er-Src	breast:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
15	JUN	chr6:121864663-121865170	HUVEC	blood vessel:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
16	GATA3	chr6:121864635-121865252	SK-N-SH	brain:	n/a	chr6:121864965-121864975 chr6:121864804-121864813 chr6:121864888-121864898 chr6:121865046-121865055
17	FOSL2	chr6:121864722-121865038	SK-N-SH	brain:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812
18	EP300	chr6:121864818-121865132	Hela-S3	cervix:	n/a	n/a
19	FOS	chr6:121864637-121865197	MCF10A-Er-Src	breast:	n/a	chr6:121864804-121864811 chr6:121864803-121864811 chr6:121864803-121864812

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:121864729..121867208-chr6:121867323..121869414,2	MCF-7	breast:

Variant related genes	Relation type
RNU4-76P	TF binding region

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12208477	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1324095	0.92[ASN][1000 genomes]
rs2025428	0.89[ASN][1000 genomes]
rs4245510	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4245511	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4560674	0.89[AFR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4945689	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4946577	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6899546	0.92[ASN][1000 genomes]
rs6929186	1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6929781	0.95[CEU][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6932915	0.85[ASN][1000 genomes]
rs6940732	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7770103	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9372658	0.94[ASN][1000 genomes]
rs9375037	0.91[ASN][1000 genomes]
rs9375041	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9385201	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9387972	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9398641	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9401414	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9401415	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9482173	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9482174	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9490317	0.92[ASN][1000 genomes]
rs9490319	0.90[ASN][1000 genomes]
rs9490320	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv528731	chr6:121857609-121875648	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv526935	chr6:121860377-121875648	Weak transcription Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121854800-121867000	Weak transcription	NHEK	skin
2	chr6:121855000-121870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:121855200-121866000	Weak transcription	HMEC	breast
4	chr6:121859800-121867000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:121861400-121870600	Weak transcription	A549	lung
6	chr6:121864600-121865000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:121864600-121865200	Enhancers	Muscle Satellite Cultured Cells	--
8	chr6:121864600-121866600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:121864800-121865000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr6:121864800-121865200	Flanking Active TSS	HUVEC	blood vessel
11	chr6:121864800-121865600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:121864800-121866200	Enhancers	NH-A	brain
13	chr6:121864800-121866200	Enhancers	Osteobl	bone
14	chr6:121864800-121866400	Enhancers	NHDF-Ad	bronchial

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