Variant report

Variant	rs2025428
Chromosome Location	chr6:121855125-121855126
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1324095	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4945689	0.88[ASN][1000 genomes]
rs4946577	0.88[ASN][1000 genomes]
rs6899546	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6911887	0.89[ASN][1000 genomes]
rs6929186	0.89[ASN][1000 genomes]
rs6929781	0.87[ASN][1000 genomes]
rs6940732	0.89[ASN][1000 genomes]
rs7770103	0.85[ASN][1000 genomes]
rs9372658	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9375037	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9375039	0.86[AFR][1000 genomes]
rs9385201	0.82[ASN][1000 genomes]
rs9398641	0.83[ASN][1000 genomes]
rs9482173	0.89[ASN][1000 genomes]
rs9490317	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9490319	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9490320	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886594	chr6:121837314-122043117	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv1847344	chr6:121845356-121875648	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv1844166	chr6:121845356-121880939	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:121853200-121857200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:121854400-121855200	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr6:121854600-121855200	Enhancers	HMEC	breast
4	chr6:121854800-121860800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr6:121854800-121867000	Weak transcription	NHEK	skin
6	chr6:121855000-121856000	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr6:121855000-121870800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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